New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 3098812244 (1.140)2 (0.010) 2/180 36.7 0.01 coding (1781/1782 nt) RCAP_rcc02898 ABC transporter ATP‑binding/permease
?NC_014034 3568360 = 218 (0.920)coding (891/2568 nt) RCAP_rcc03372 hypothetical protein
Rejected: Position hash score below cutoff.

CATGCCGACCGGATCGTGGTGATGCAGGCCGGGCGGGTGGTCGAAGAGGGCCCGCATGAGACCTTGCGCGCGCAAGGCGGTCTTTACGCCAAACTGCTGCGCGGCACCTG....................................................................................................  >  NC_014034/3098703‑3098812
....................................................................................................GCGGCACCTGGATTCCGATGATGCTCTCGGATCTGGGCGGCGGGGTGTTTGACGGCGCGCATCTGGTGGCGAATTTCGAGCTGCTCAACCCGTCGCGCACGCTTTTCCGC  >  NC_014034/3568360‑3568459
                                                                                                                                                                                                                  
                                          GAAGAGGGCCCGCATGAGACCTTGCGCGCGCAAGGCGGTCTTTACGCCAAACTGCTGCGCGGCACCTGGATTCCGATGATGCTCTCGGATCTGGGCGGCGG                                                                     >  2:3994609/1‑101 (MQ=255)
                                                               TTGCGCGCGCAAGGCGGTCTTTACGCCAAACTGCTGCGCGGCACCTGGATTCCGATGATGCTCTCGGATCTGGGCGGCGGGGTGTTTGACGGCGCGCATCT                                                <  1:3994894/101‑1 (MQ=255)
                                                                                                                                                                                                                  
CATGCCGACCGGATCGTGGTGATGCAGGCCGGGCGGGTGGTCGAAGAGGGCCCGCATGAGACCTTGCGCGCGCAAGGCGGTCTTTACGCCAAACTGCTGCGCGGCACCTG....................................................................................................  >  NC_014034/3098703‑3098812
....................................................................................................GCGGCACCTGGATTCCGATGATGCTCTCGGATCTGGGCGGCGGGGTGTTTGACGGCGCGCATCTGGTGGCGAATTTCGAGCTGCTCAACCCGTCGCGCACGCTTTTCCGC  >  NC_014034/3568360‑3568459

Base quality scores:  ATCG  < 3 ≤  ATCG  < 33 ≤  ATCG  < 34 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG