New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 3103709212 (0.970)2 (0.010) 2/184 37.1 0.01 coding (2572/3117 nt) RCAP_rcc02907 hypothetical protein
?NC_014034 3356716 = 234 (0.990)coding (678/2193 nt) RCAP_rcc03159 hemolysin‑type calcium‑binding repeat family protein
Rejected: Position hash score below cutoff.

TTGAAGGCTGTATTCAGTGAGCGATTTGGCCTTGATGTCGGCGACCTTGGCCAGCACCGCCCAGGTGGTGCCGACGCCGAAGGAAATCTTCGTGCGCTCCATCCCGGG....................................................................................................  >  NC_014034/3103602‑3103709
....................................................................................................ATCCCGGGCGAGGACGAGACCGGCACCGAGAATGCGGACGATCTGCAGGGCACGGAGGCCGATGACAGCATCGACGGTCTGGCCGGGAACGACACGCTGGACGGTCTG  >  NC_014034/3356716‑3356815
                                                                                                                                                                                                                
                                                                        gatctCGAAGGAAATCTTCGTGCGCTCCATCCCGGGCGAGGACGAGACCGGCACCGAGAATGCGGACGATCTGCAGGGCACGGAGGCCGATGACAGCATCG                                     <  1:3569266/96‑1 (MQ=255)
                                                                             CGAAGGAAATCTTCGTGCGCTCCATCCCGGGCGAGGACGAGACCGGCACCGAGAATGCGGACGATCTGCAGGGCACGGAGGCCGATGACAGCATCGAgatc                                >  2:3568998/1‑97 (MQ=255)
                                                                                                                                                                                                                
TTGAAGGCTGTATTCAGTGAGCGATTTGGCCTTGATGTCGGCGACCTTGGCCAGCACCGCCCAGGTGGTGCCGACGCCGAAGGAAATCTTCGTGCGCTCCATCCCGGG....................................................................................................  >  NC_014034/3103602‑3103709
....................................................................................................ATCCCGGGCGAGGACGAGACCGGCACCGAGAATGCGGACGATCTGCAGGGCACGGAGGCCGATGACAGCATCGACGGTCTGGCCGGGAACGACACGCTGGACGGTCTG  >  NC_014034/3356716‑3356815

Base quality scores:  ATCG  < 3 ≤  ATCG  < 29 ≤  ATCG  < 31 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG