New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 3138660191 (0.860)2 (0.010) 2/188 37.5 0.01 coding (697/723 nt) RCAP_rcc02950 hypothetical protein
?NC_014034 = 3138679 193 (0.810)coding (678/723 nt) RCAP_rcc02950 hypothetical protein
Rejected: Position hash score below cutoff.

TGCGCAGGGCTTTGCTCGATCTCGTTGCGCCCCGTTTCCAGATTTGTGGGGAGATTCTTGGTCGGTTCCATCGTTCGCCTCACCATTTATGCGATAGTTGCGCTGC....................................................................................................  >  NC_014034/3138555‑3138660
....................................................................................................CGCTGCCGCGCTGGCTGAATACGCCGCAGCGCAACTATCGCATAAATGGTGAGGCGAACGATGGAACCGACCAAGAATCTCCCCACAAATCTGGAAACGGGGCGCA  <  NC_014034/3138679‑3138580
                                                                                                                                                                                                              
                                                                       CGTTCGCCTCACCATTTATGCGATAGTTGCGCTGCCGCGCTGGCTGAATACGCCGCAGCGCAACTATCGCATAAATGGTGAGGCGAACGATGGAACCGACC                                    >  2:94967/1‑101 (MQ=255)
                                                                            GCCTCACCATTTATGCGATAGTTGCGCTGCCGCGCTGGCTGAATACGCCGCAGCGCAACTATCGCATAAATGGTGAGGCGAACGATGGAACCGACCAAGAA                               <  1:94981/101‑1 (MQ=255)
                                                                                                                                                                                                              
TGCGCAGGGCTTTGCTCGATCTCGTTGCGCCCCGTTTCCAGATTTGTGGGGAGATTCTTGGTCGGTTCCATCGTTCGCCTCACCATTTATGCGATAGTTGCGCTGC....................................................................................................  >  NC_014034/3138555‑3138660
....................................................................................................CGCTGCCGCGCTGGCTGAATACGCCGCAGCGCAACTATCGCATAAATGGTGAGGCGAACGATGGAACCGACCAAGAATCTCCCCACAAATCTGGAAACGGGGCGCA  <  NC_014034/3138679‑3138580

Base quality scores:  ATCG  < 3 ≤  ATCG  < 27 ≤  ATCG  < 31 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG