New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 3201013194 (0.860)2 (0.010) 2/190 37.8 0.01 coding (69/660 nt) RCAP_rcc03011 winged helix family two component transcriptional regulator
?NC_014034 = 3247308 225 (0.950)coding (493/1965 nt) dnaG DNA primase
Rejected: Position hash score below cutoff.

CACAGGATAGGACAAGGGGGAACAAGGAGCCCGCCATGCGCATCCTCATCGTGGAAGACGACGCCATTCTGGGGGCCGCGGTGCGCGATCAGGTGGCCGCCGAC...................................................................................................  >  NC_014034/3200910‑3201013
...................................................................................................CCGACAGCCGCAACGGCCTGTTCCAGGCCCTGACCGGCAAAGGCATCGCCCCCGACCTGATCGTCGATGCGGGGCTGTGCATCCGCCCCGACGAAGGCGGCACC  <  NC_014034/3247308‑3247210
                                                                                                                                                                                                           
                                                                 atctTGGGGGCCGCGGTGCGCGATCAGGTGGCCGCCGACAGCCGCAACGGCCTGTTCCAGGCCCTGACCGGCAAAGGCATCGCCCCCGACCTGATCGTCGA                                       <  1:2365761/97‑1 (MQ=255)
                                                                     TGGGGGCCGCGGTGCGCGATCAGGTGGCCGCCGACAGCCGCAACGGCCTGTTCCAGGCCCTGACCGGCAAAGGCATCGCCCCCGACCTGATCGTCGAagat                                   >  2:2365599/1‑97 (MQ=255)
                                                                                                                                                                                                           
CACAGGATAGGACAAGGGGGAACAAGGAGCCCGCCATGCGCATCCTCATCGTGGAAGACGACGCCATTCTGGGGGCCGCGGTGCGCGATCAGGTGGCCGCCGAC...................................................................................................  >  NC_014034/3200910‑3201013
...................................................................................................CCGACAGCCGCAACGGCCTGTTCCAGGCCCTGACCGGCAAAGGCATCGCCCCCGACCTGATCGTCGATGCGGGGCTGTGCATCCGCCCCGACGAAGGCGGCACC  <  NC_014034/3247308‑3247210

Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 30 ≤  ATCG  < 35 ≤  ATCG  < 39 ≤  ATCG