New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	3302319 =	231 (1.050)	2 (0.010)	2/186	37.3	0.01	intergenic (‑111/‑7)	RCAP_rcc03106/hisC2	enoyl‑CoA hydratase/isomerase/histidinol‑phosphate aminotransferase
	?	NC_014034	3424003 =	235 (0.990)					coding (451/1935 nt)	capD	polysaccharide biosynthesis protein CapD
Rejected: Position hash score below cutoff.

GAAACGGGCGGCCGCGCAGGCGTTCCTGCGTTTCGGGGCCGACAAAGGGCACGGTGGCGGGCAGGCTGGCGACAAGCGGCGTGAGACGGATCTGGGTCATGCGCCAT....................................................................................................  <  NC_014034/3302425‑3302319 ....................................................................................................GCGCCATAGATCGCCACCCGCGACAGGGTGCGGGAATTGCGATAGATCGCGGTCAGGATCTGCGTCAGCGTCAGCCGGGTGAAGAAGAAGACGGTGAAGTAAAGCAG  >  NC_014034/3424003‑3424102                                                                                                                                                                                                                                                                     GGTGGCGGGCAGGCTGGCGACAAGCGGCGTGAGACGGATCTGGGTCATGCGCCATAGATCGCCACCCGCGACAGGGTGCGGGAATTGCGATAGATCGCGGT                                                        >  1:4478125/1‑101 (MQ=255)                                                                                CGTGAGACGGATCTGGGTCATGCGCCATAGATCGCCACCCGCGACAGGGTGCGGGAATTGCGATAGATCGCGGTCAGGATCTGCGTCAGCGTCAGCCGGGT                             <  2:4477830/101‑1 (MQ=255)                                                                                                                                                                                                                 GAAACGGGCGGCCGCGCAGGCGTTCCTGCGTTTCGGGGCCGACAAAGGGCACGGTGGCGGGCAGGCTGGCGACAAGCGGCGTGAGACGGATCTGGGTCATGCGCCAT....................................................................................................  <  NC_014034/3302425‑3302319 ....................................................................................................GCGCCATAGATCGCCACCCGCGACAGGGTGCGGGAATTGCGATAGATCGCGGTCAGGATCTGCGTCAGCGTCAGCCGGGTGAAGAAGAAGACGGTGAAGTAAAGCAG  >  NC_014034/3424003‑3424102 Base quality scores:  ATCG  < 3 ≤  ATCG  < 33 ≤  ATCG  < 34 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG