New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	392431 =	55 (0.270)	10 (0.050)	7/172	30.4	0.26	intergenic (‑79/+64)	RCAP_rcc00363/trmD	hypothetical protein/tRNA (guanine‑N1)‑methyltransferase
	?	NC_014034	= 974293	2 (0.010)					intergenic (+173/+86)	RCAP_rcc00884/RCAP_rcc00885	hypothetical protein/hypothetical protein
Rejected: Position hash score below cutoff.

TGACGCGGGACCGGCGGCCGGATTTGTGGGAGAAGTTCGGCAAGTGATTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTG............................................................................................  <  NC_014034/392541‑392431 .................................................................................................CCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCA.CGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGGTCCGGGGG  <  NC_014034/974293‑974203                                                                                                                                                                                                                                                                                         CCGGGGGCTCCGCCCCCGGCCCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGG                            <  2:740619/101‑1 (MQ=0)                                                                              CGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGT                           <  1:3302467/101‑1 (MQ=0)                                                                              CGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGT                           <  2:3365408/101‑1 (MQ=0)                                                                                    CTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAAT                     <  1:3383763/101‑1 (MQ=0)                                                                                      CCGCCCCCGGACCCCCGGGATATTTGCCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATAC                   <  2:981651/101‑1 (MQ=0)                                                                                      CCGCCCCCGGACCCCCGGGATATTGGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATAC                   <  2:1350373/101‑1 (MQ=0)                                                                                       ccCCCCCGGCCCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACG                  <  2:3777778/99‑1 (MQ=0)                                                                                       CGCCCCCGGCCCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACG                  <  2:757891/101‑1 (MQ=0)                                                                                       CGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACG                  >  2:3453023/1‑101 (MQ=0)                                                                                                 CCCCGGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGGTC        <  2:3814296/101‑1 (MQ=0)                                                                                                                                                                                                             TGACGCGGGACCGGCGGCCGGATTTGTGGGAGAAGTTCGGCAAGTGATTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTG............................................................................................  <  NC_014034/392541‑392431 .................................................................................................CCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCA.CGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGGTCCGGGGG  <  NC_014034/974293‑974203 Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 20 ≤  ATCG  < 31 ≤  ATCG  < 41 ≤  ATCG