New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 408497	128 (0.590)	22 (0.100)	11/180	28.1	0.12	intergenic (+115/+33)	glnA1/dapA	glutamine synthetase/dihydrodipicolinate synthase
	?	NC_014034	2640261 =	194 (0.820)					intergenic (‑237/+39)	thrS/RCAP_rcc02462	threonyl‑tRNA synthetase/hypothetical protein
Rejected: Position hash score below cutoff.

CTCTGCCCCCAGACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGCAAAGACGGGGG....................................................................................................  >  NC_014034/408394‑408497 ................................................................................................GACGGGGGGCAGAGCCCCCCTCCCGGGTCTTTCTCAAGCGTTCCGGCTCAGAACCGGAAGCCCGCGCGCACCTGCACGGTGTTGAAGTTGGTGTCGACGCTGCGCGCA  >  NC_014034/2640261‑2640360                                                                                                                                                                                                                 TGCCCCCAGACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGG                                                                                                     <  2:3073394/101‑1 (MQ=1)    TGCCCCCAGACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGG                                                                                                     >  1:3521186/1‑101 (MQ=1)     GCCCCCAGACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGC                                                                                                    >  2:2276345/1‑101 (MQ=1)     GCCCCCAGACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGC                                                                                                    >  2:1794406/1‑101 (MQ=1)       CCCCAGACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAG                                                                                                  <  1:1155364/101‑1 (MQ=1)       CCCCAGACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAG                                                                                                  >  2:746743/1‑101 (MQ=1)        CCCAGACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGA                                                                                                 <  1:1859462/101‑1 (MQ=1)        CCCAGACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGA                                                                                                 <  1:2715690/101‑1 (MQ=1)        CCCAGAACCCCGGGATATTTGCGGCAGGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGA                                                                                                 <  2:3677516/101‑1 (MQ=0)         CCAGACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAG                                                                                                >  2:782892/1‑101 (MQ=1)         CCAGACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAG                                                                                                >  2:4497690/1‑101 (MQ=1)         CCAGACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAG                                                                                                >  2:4132563/1‑101 (MQ=1)           agcCCCCGGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGCC                                                                                              <  2:4039632/98‑1 (MQ=0)           agcCCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGCC                                                                                              <  2:1697371/98‑1 (MQ=0)           AGACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGCC                                                                                              <  1:2927688/101‑1 (MQ=1)           AGACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCCGAAAGC.AACACGGGGGGCAGAGCC                                                                                              >  2:3588934/1‑101 (MQ=0)            GACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGCCC                                                                                             >  2:4568544/1‑101 (MQ=1)             ACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGGCCC                                                                                            >  1:2820786/1‑101 (MQ=0)             ACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGCCCC                                                                                            <  1:2679001/101‑1 (MQ=1)             ACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGCCCC                                                                                            >  2:487519/1‑101 (MQ=1)             ACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGCCCC                                                                                            >  1:1496102/1‑101 (MQ=1)             ACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGCCCC                                                                                            >  1:1065102/1‑101 (MQ=1)              CCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTTCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGCCCCC                                                                                           >  1:4172146/1‑101 (MQ=0)               CCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGCCCCCC                                                                                          <  1:2206378/101‑1 (MQ=1)                    GGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGCCCCCCgcaca                                                                                     <  2:3058865/101‑6 (MQ=21)                     GATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGCCCCCCgcacag                                                                                    <  1:1512515/101‑7 (MQ=25)                                                                                                                                                                                                              CTCTGCCCCCAGACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGCAAAGACGGGGG....................................................................................................  >  NC_014034/408394‑408497 ................................................................................................GACGGGGGGCAGAGCCCCCCTCCCGGGTCTTTCTCAAGCGTTCCGGCTCAGAACCGGAAGCCCGCGCGCACCTGCACGGTGTTGAAGTTGGTGTCGACGCTGCGCGCA  >  NC_014034/2640261‑2640360 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG