New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 456144	207 (0.890)	31 (0.130)	6/196	33.9	0.20	intergenic (+99/+7)	RCAP_rcc00426/panC	hypothetical protein/pantoate‑‑beta‑alanine ligase
	?	NC_014034	= 2330173	34 (0.140)					intergenic (+148/+164)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

TGATCCCGGCCGCACCCGCGCGAGGGGCGTATTTTTGCCAAGAAGAAACGATGCGGTTTTTCCTGGTCCAAATACGCCGGGGGTCCGGGGGCAGCGCCCCCG....................................................................................................  >  NC_014034/456043‑456144 ....................................................................................................CGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAGCCGA  <  NC_014034/2330173‑2330074                                                                                                                                                                                                                                                                                CAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCG                                   >  1:1812659/1‑101 (MQ=14)                                                                         TACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCC                               >  1:1103558/1‑101 (MQ=32)                                                                          ACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCG                              >  2:2899445/1‑101 (MQ=32)                                                                           CGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGT                             >  2:256130/1‑101 (MQ=32)                                                                            GCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTT                            >  2:1039511/1‑101 (MQ=32)                                                                             CCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTG                           <  2:418331/101‑1 (MQ=32)                                                                             CCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTG                           >  2:1312382/1‑101 (MQ=32)                                                                              CGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGC                          >  2:3409919/1‑101 (MQ=32)                                                                              CGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGC                          >  1:4156258/1‑101 (MQ=32)                                                                                GGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCG                        >  1:1022193/1‑101 (MQ=32)                                                                                GGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCG                        >  1:560993/1‑101 (MQ=32)                                                                                  ggtggGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCC                      <  1:3498758/96‑1 (MQ=17)                                                                                   gtgCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCC                     >  1:3516194/4‑101 (MQ=32)                                                                                     gCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTT                   >  2:1389037/2‑101 (MQ=32)                                                                                      CGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTG                  >  2:2049383/1‑101 (MQ=32)                                                                                       GGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGG                 >  2:2079464/1‑101 (MQ=32)                                                                                          gggcgccCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGG              <  2:3253346/94‑1 (MQ=0)                                                                                          ggcggaGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGG              <  2:2486798/95‑1 (MQ=31)                                                                                          ggcggaGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGG              >  2:3503630/7‑101 (MQ=31)                                                                                          ggcgcccCCCCCCCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGG              <  1:1012506/94‑1 (MQ=0)                                                                                          GGCGGCCCCCCCCCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGG              <  2:2558201/101‑1 (MQ=0)                                                                                           gcggaGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGA             >  1:3030011/6‑101 (MQ=11)                                                                                             ggccCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGG           <  1:1025843/97‑1 (MQ=1)                                                                                             ggaGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGG           >  1:2135529/4‑101 (MQ=1)                                                                                              gaGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGC          >  1:452511/3‑101 (MQ=1)                                                                                                GCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCA        >  2:3152636/1‑101 (MQ=1)                                                                                                 CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAA       >  1:3406152/1‑101 (MQ=1)                                                                                                 CCCCCCCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAA       <  1:2555321/101‑1 (MQ=1)                                                                                                   CCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAGC     <  2:1078762/101‑1 (MQ=1)                                                                                                   CCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAGC     <  1:651933/101‑1 (MQ=1)                                                                                                   CCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAGC     >  2:456194/1‑101 (MQ=1)                                                                                                                                                                                                            TGATCCCGGCCGCACCCGCGCGAGGGGCGTATTTTTGCCAAGAAGAAACGATGCGGTTTTTCCTGGTCCAAATACGCCGGGGGTCCGGGGGCAGCGCCCCCG....................................................................................................  >  NC_014034/456043‑456144 ....................................................................................................CGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAGCCGA  <  NC_014034/2330173‑2330074 Base quality scores:  ATCG  < 3 ≤  ATCG  < 23 ≤  ATCG  < 30 ≤  ATCG  < 34 ≤  ATCG  < 39 ≤  ATCG