New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 49803 =228 (1.050)2 (0.010) 2/182 36.9 0.01 coding (732/1002 nt) RCAP_rcc00040 aminoglycoside phosphotransferase
?NC_014034 1299264 = 169 (0.710)coding (198/1977 nt) urtA urea ABC transporter permease UrtA
Rejected: Position hash score below cutoff.

GGCCACCCATCCGGTCTACGATCTGGTTTCGGCCCTGCAAGACGCCCGCCGCGATGTGGCGCCCGCCGTCCTTGCGGCCGAACTTCGCCGCTATGCCAGCGCAGGCGGG....................................................................................................  <  NC_014034/49911‑49803
....................................................................................................GCAGGCGGGGACCGGGGCGCCCGCGTTCCTGCAGGCCTGGGCCGACAAGAAACTGGGCGCGCGCAAGGCGGATGGCGCGATCTTCCGGGTGACGAAAACGGCCGCTGGC  >  NC_014034/1299264‑1299363
                                                                                                                                                                                                                 
                                   TGCAAGACGCCCGCCGCGATGTGGCGCCCGCCGTCCTTGCGGCCGAACTTCGCCGCTATGCCAGCGCAGGCGGGGACCGGGGCGCCCGCGTTCCTGCAGGC                                                                           >  1:2332017/1‑101 (MQ=255)
                                                                  CGTCCTTGCGGCCGAACTTCGCCGCTATGCCAGCGCAGGCGGGGACCGGGGCGCCCGCGTTCCTGCAGGCCTGGGCCGACAAGAAACTGGGCGCGCGCAAG                                            <  2:2331855/101‑1 (MQ=255)
                                                                                                                                                                                                                 
GGCCACCCATCCGGTCTACGATCTGGTTTCGGCCCTGCAAGACGCCCGCCGCGATGTGGCGCCCGCCGTCCTTGCGGCCGAACTTCGCCGCTATGCCAGCGCAGGCGGG....................................................................................................  <  NC_014034/49911‑49803
....................................................................................................GCAGGCGGGGACCGGGGCGCCCGCGTTCCTGCAGGCCTGGGCCGACAAGAAACTGGGCGCGCGCAAGGCGGATGGCGCGATCTTCCGGGTGACGAAAACGGCCGCTGGC  >  NC_014034/1299264‑1299363

Base quality scores:  ATCG  < 3 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG