New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 530939	133 (0.610)	56 (0.260)	32/184	17.0	0.25	intergenic (+17/+124)	valS/RCAP_rcc00497	valyl‑tRNA synthetase/UbiA prenyltransferase
	?	NC_014034	3609079 =	207 (0.870)					intergenic (+18/‑153)	clpB/dinB	chaperone ClpB/DNA polymerase IV
Rejected: Position hash score below cutoff.

GATCGAGGAAGCCCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTC................................  >  NC_014034/530832‑530939 ....................................................................................................GGGGGCTCT.G.CCCCCGCTTCGCTCCCCCCGGGATATTT  >  NC_014034/3609079‑3609108                                                                                                                                                      AAGCCCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT                                 <  2:824068/101‑1 (MQ=255)         AAGCCCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT                                 <  1:3368608/101‑1 (MQ=255)          AGCCCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G                               <  2:928544/101‑1 (MQ=255)           GCCCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.C                             <  1:1275870/101‑1 (MQ=255)            CCCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CC                            <  2:934687/101‑1 (MQ=255)             CCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCC                           <  2:830252/101‑1 (MQ=255)             CCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCC                           >  2:1201837/1‑101 (MQ=255)              CGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCC                          >  2:656834/1‑101 (MQ=255)               GCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCC                         <  1:2515840/101‑1 (MQ=255)               GCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCC                         <  1:433185/101‑1 (MQ=255)                CGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCCc                        <  2:807698/101‑2 (MQ=255)                CGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCCc                        <  1:2307068/101‑2 (MQ=255)                CGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCCc                        <  1:2558836/101‑2 (MQ=255)                CGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCCc                        >  1:2692377/1‑100 (MQ=255)                CGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCCc                        <  2:3202202/101‑2 (MQ=255)                CGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCCc                        <  2:1458908/101‑2 (MQ=255)                 GAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCCcg                       >  1:103534/1‑99 (MQ=255)                 GAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCCcg                       <  1:1279386/101‑3 (MQ=255)                   AAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGGGCT.G.CCCCCcccc                     >  1:1107216/1‑97 (MQ=255)                   AAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCCcgct                     <  1:2706132/101‑5 (MQ=255)                    AACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCCcgctt                    <  2:3435075/101‑6 (MQ=255)                    AACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCCcgctt                    <  1:1877697/101‑6 (MQ=255)                      CCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCG                   <  2:4014982/101‑1 (MQ=255)                      CCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCG                   <  1:782666/101‑1 (MQ=255)                         CGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTC                >  2:583227/1‑101 (MQ=255)                         CGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTC                <  2:1010678/101‑1 (MQ=255)                         CGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTC                <  1:1553185/101‑1 (MQ=255)                          GCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGG.CCCCCGCTTCGCTCC               >  2:1902095/1‑101 (MQ=255)                          GCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCC               <  1:3665861/101‑1 (MQ=255)                           CCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCC              <  2:2395791/101‑1 (MQ=255)                            CGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCC             <  2:3015764/101‑1 (MQ=255)                            CGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCC             >  1:3476729/1‑101 (MQ=255)                             GCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCC            <  2:660351/101‑1 (MQ=255)                             GCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCC            >  1:1171193/1‑101 (MQ=255)                              CGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCC           <  2:2103773/101‑1 (MQ=255)                              CGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCC           <  2:3606865/101‑1 (MQ=255)                              CGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCC           <  1:3390573/101‑1 (MQ=255)                                CGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGG         <  2:1345955/101‑1 (MQ=255)                                CGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGG         >  1:4524317/1‑101 (MQ=255)                                 GCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGG        <  1:1974660/101‑1 (MQ=255)                                 GCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGG        <  2:3740820/101‑1 (MQ=255)                                 GCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGG        <  2:4193678/101‑1 (MQ=255)                                 GCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGG        <  1:319644/101‑1 (MQ=255)                                  CGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGA       <  1:2009335/101‑1 (MQ=255)                                   GCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCTTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGAT      <  1:243179/101‑1 (MQ=255)                                   GCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGAT      <  2:2735573/101‑1 (MQ=255)                                   GCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGAT      <  2:828500/101‑1 (MQ=255)                                   GCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGAT      <  2:4551362/101‑1 (MQ=255)                                    CGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGATA     <  1:656896/101‑1 (MQ=255)                                     GGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGATAT    >  1:2322127/1‑101 (MQ=255)                                      GAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGATATT   <  2:4538467/101‑1 (MQ=255)                                      GAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGATATT   >  2:2863023/1‑101 (MQ=255)                                      GAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGATATT   >  2:1688778/1‑101 (MQ=255)                                       AAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGATATTT  >  1:1177493/1‑101 (MQ=255)                                       AAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGATATTT  >  2:4181899/1‑101 (MQ=255)                                       AAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGATATTT  >  1:3068607/1‑101 (MQ=255)                                                                                                                                              GATCGAGGAAGCCCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTC................................  >  NC_014034/530832‑530939 ....................................................................................................GGGGGCTCT.G.CCCCCGCTTCGCTCCCCCCGGGATATTT  >  NC_014034/3609079‑3609108 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 37 ≤  ATCG