New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 531049218 (1.000)65 (0.300) 17/184 24.5 0.36 intergenic (+127/+14) valS/RCAP_rcc00497 valyl‑tRNA synthetase/UbiA prenyltransferase
?NC_014034 1608059 = 13 (0.050)intergenic (+329/‑18) RCAP_rcc01484/murD hypothetical protein/UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
Rejected: Position hash score below cutoff.

GCTCCCCCCGGGATATTTTCGGCAAGATAAAGGCCCGGAAGCCTCCCTTTATCTTGCCGGAAATATCCCAAGGGGGTCGGGGGGTGTGAAACCCCC.GC...................................................................................................  >  NC_014034/530952‑531049
..........................................................................................ACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACGGCGGCGGCA  >  NC_014034/1608059‑1608157
                                                                                                                                                                                                      
                                                          tcAAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGC                                        <  2:4629107/99‑1 (MQ=33)
                                                           cAAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCT                                       >  1:1781193/2‑101 (MQ=32)
                                                            AAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTG                                      >  1:1287858/1‑101 (MQ=32)
                                                            AAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTG                                      >  2:3601356/1‑101 (MQ=32)
                                                            AAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTG                                      <  2:1578016/101‑1 (MQ=32)
                                                            AAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTG                                      >  1:4121184/1‑101 (MQ=32)
                                                             AATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGG                                     <  2:1294949/101‑1 (MQ=32)
                                                             AATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGG                                     >  2:1270484/1‑101 (MQ=32)
                                                              ATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGG                                    >  2:868106/1‑101 (MQ=32)
                                                              ATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGG                                    >  2:810195/1‑101 (MQ=32)
                                                              ATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGG                                    >  1:4478360/1‑101 (MQ=32)
                                                              ATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGG                                    >  1:2724164/1‑101 (MQ=32)
                                                               TATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGG                                   <  1:905454/101‑1 (MQ=32)
                                                               TATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGG                                   >  1:2131916/1‑101 (MQ=32)
                                                                ATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGC                                  >  2:59282/1‑101 (MQ=32)
                                                                  CCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTC                                >  1:256564/1‑101 (MQ=11)
                                                                  CCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTC                                >  1:3323614/1‑101 (MQ=11)
                                                                   CCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCG                               >  1:4266832/1‑101 (MQ=1)
                                                                    cacGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGG                              >  2:3770833/4‑101 (MQ=1)
                                                                     acGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGG                             >  1:3494316/3‑101 (MQ=1)
                                                                     acGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGG                             >  1:239311/3‑101 (MQ=1)
                                                                       GGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCG                           >  1:2870174/1‑101 (MQ=1)
                                                                       GGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCG                           >  2:3357764/1‑101 (MQ=1)
                                                                       GGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCG                           <  1:627014/101‑1 (MQ=1)
                                                                       GGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCG                           >  2:4477400/1‑101 (MQ=1)
                                                                       GGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCG                           >  1:3905702/1‑101 (MQ=1)
                                                                       GGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCG                           >  1:2439124/1‑101 (MQ=1)
                                                                        GGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGGGC                          >  2:3393370/1‑101 (MQ=1)
                                                                        GGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGC                          >  2:3969419/1‑101 (MQ=1)
                                                                         gggtgcGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCT                         <  2:4384047/95‑1 (MQ=1)
                                                                          ggtgcGGGGGTGTGAACCCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTC                        <  1:3601624/96‑1 (MQ=1)
                                                                          ggtgcGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTC                        >  2:1525063/6‑101 (MQ=1)
                                                                          ggtgcGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTC                        <  2:1235654/96‑1 (MQ=1)
                                                                          ggtgcGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTC                        >  2:704335/6‑101 (MQ=1)
                                                                          ggtgcGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTC                        >  1:3406527/6‑101 (MQ=1)
                                                                           gtgcGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCG                       >  1:4122887/5‑101 (MQ=1)
                                                                           gtgcGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCG                       >  2:1863904/5‑101 (MQ=1)
                                                                             gcGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGGGCTCGGG                     >  2:548541/3‑101 (MQ=1)
                                                                             gcGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGG                     >  2:4423894/3‑101 (MQ=1)
                                                                             gGGGGGGGGTGAAACCCCCGGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGG                      <  1:3452477/100‑1 (MQ=2)
                                                                              cGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGg                    >  1:1899089/2‑100 (MQ=1)
                                                                              cGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGT                    >  1:1758146/2‑101 (MQ=1)
                                                                               GGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTC                   <  1:2888433/101‑1 (MQ=1)
                                                                                GGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCT                  <  2:3921231/101‑1 (MQ=1)
                                                                                GGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCT                  >  1:3173785/1‑101 (MQ=1)
                                                                                 GGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTG                 <  1:175157/101‑1 (MQ=1)
                                                                                 GGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTG                 <  2:4399020/101‑1 (MQ=1)
                                                                                 GGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTG                 >  2:1996607/1‑101 (MQ=1)
                                                                                  GGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGG                <  1:4424186/101‑1 (MQ=1)
                                                                                   GTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGC               <  2:4478065/101‑1 (MQ=1)
                                                                                   GTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGC               <  2:2902325/101‑1 (MQ=1)
                                                                                   GTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGC               <  2:2725233/101‑1 (MQ=1)
                                                                                   GTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGC               >  1:226250/1‑101 (MQ=1)
                                                                                    TGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCC              >  1:168321/1‑101 (MQ=1)
                                                                                    TGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCC              <  1:3640183/101‑1 (MQ=1)
                                                                                      tggAACCGCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGAGATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAC            <  2:4389953/98‑1 (MQ=0)
                                                                                      TGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAC            <  1:1525172/101‑1 (MQ=1)
                                                                                      TGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAC            >  2:4602531/1‑101 (MQ=1)
                                                                                      TGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAC            >  1:645147/1‑101 (MQ=1)
                                                                                      TGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAC            <  1:2720724/101‑1 (MQ=1)
                                                                                       gcAACCCCC.GCAGTTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACG           <  2:834355/99‑1 (MQ=1)
                                                                                       GAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACG           >  2:3866828/1‑101 (MQ=1)
                                                                                       GAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACG           >  2:3356485/1‑101 (MQ=1)
                                                                                         AACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACGGC         <  1:3867113/101‑1 (MQ=1)
                                                                                         AACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGATCGGGCGCTCGGGTCTGGCCACGGC         >  2:727648/1‑101 (MQ=1)
                                                                                                                                                                                                      
GCTCCCCCCGGGATATTTTCGGCAAGATAAAGGCCCGGAAGCCTCCCTTTATCTTGCCGGAAATATCCCAAGGGGGTCGGGGGGTGTGAAACCCCC.GC...................................................................................................  >  NC_014034/530952‑531049
..........................................................................................ACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACGGCGGCGGCA  >  NC_014034/1608059‑1608157

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG