New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 565336	234 (1.040)	58 (0.260)	35/190	16.4	0.26	intergenic (+151/+11)	RCAP_rcc00526/RCAP_rcc00527	dimethylglycine dehydrogenase/family 25 glycosyl hydrolase
	?	NC_014034	1303939 =	100 (0.420)					intergenic (+126/+31)	urtE/RCAP_rcc01231	urea ABC transporter ATP‑binding protein UrtE/UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
Rejected: Position hash score below cutoff.

TCGCAAGGGCGTATTTGGACCAAGAAAAAGCGGGCGTGTTTTTTCTTGGTGAAAATACGCCGGGGGGAGACTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCC....................................................................................................  >  NC_014034/565233‑565336 ...................................................................................................CCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAGCGCGCCGAG  >  NC_014034/1303939‑1304038                                                                                                                                                                                                                                                                    atatcCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCG                                                   <  2:1726875/96‑1 (MQ=12)                                                       atatcCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCG                                                   >  1:3954970/6‑101 (MQ=12)                                                         atcCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCC                                                 >  2:1910988/4‑101 (MQ=2)                                                         atcCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCC                                                 >  2:2463653/4‑101 (MQ=2)                                                         atcCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCC                                                 >  1:2169724/4‑101 (MQ=2)                                                         atcCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCC                                                 >  1:55191/4‑101 (MQ=2)                                                          tcCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCC                                                <  1:1331944/99‑1 (MQ=0)                                                          tcCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCC                                                <  2:2789066/99‑1 (MQ=0)                                                          tcCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGCCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCC                                                >  1:3979998/3‑101 (MQ=0)                                                            CCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGC                                              >  1:3638509/1‑101 (MQ=9)                                                             CGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCA                                             <  1:1330941/101‑1 (MQ=9)                                                             CGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCA                                             <  1:1369859/101‑1 (MQ=9)                                                             CGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCA                                             >  1:710613/1‑101 (MQ=9)                                                             CGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCA                                             >  2:2702082/1‑101 (MQ=9)                                                             CGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCA                                             >  2:4137729/1‑101 (MQ=9)                                                                  ggtgaaTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGG                                        >  1:629991/7‑101 (MQ=12)                                                                  ggtgaaTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGG                                        <  1:2348902/95‑1 (MQ=9)                                                                  ggtgaaTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGG                                        <  2:777226/95‑1 (MQ=9)                                                                   gtgaaTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGG                                       >  1:2375234/6‑101 (MQ=17)                                                                   gtgaaTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGG                                       >  1:1745391/6‑101 (MQ=17)                                                                    tgaaTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGc                                      >  1:29516/5‑100 (MQ=17)                                                                     gaaTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTC                                     >  1:3008341/4‑101 (MQ=17)                                                                      aaTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCT                                    <  2:3063722/99‑1 (MQ=18)                                                                      aaTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCT                                    <  1:1544218/99‑1 (MQ=18)                                                                      aaTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCT                                    <  1:4053640/99‑1 (MQ=18)                                                                      aaTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCT                                    >  1:4243843/3‑101 (MQ=18)                                                                       aTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTT                                   >  2:1809356/2‑101 (MQ=21)                                                                       aTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTT                                   >  2:286506/2‑101 (MQ=21)                                                                       aTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTT                                   >  1:4164975/2‑101 (MQ=21)                                                                       aTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTT                                   <  2:3056202/100‑1 (MQ=21)                                                                        TTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTG                                  >  2:309369/1‑101 (MQ=35)                                                                        TTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTG                                  >  2:1461083/1‑101 (MQ=35)                                                                         TGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCGCAAGCCCGCCCGCATCAGGGTCTTtc                                 >  2:682460/1‑99 (MQ=25)                                                                          GGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCG                                >  1:825977/1‑101 (MQ=35)                                                                          GGCCGAAGGCCAAGAGGGGGGCACCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCG                                <  2:566670/101‑1 (MQ=25)                                                                           GCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGC                               <  1:2355249/101‑1 (MQ=34)                                                                             CGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCAC                             >  2:4441012/1‑101 (MQ=32)                                                                              GAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACC                            >  1:4449681/1‑101 (MQ=31)                                                                              GAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACC                            >  1:1628336/1‑101 (MQ=31)                                                                               AAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCG                           <  2:3012725/101‑1 (MQ=11)                                                                               AAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCG                           <  2:3829949/101‑1 (MQ=11)                                                                               AAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCG                           >  2:801729/1‑101 (MQ=11)                                                                                AGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGG                          <  1:2002606/101‑1 (MQ=1)                                                                                AGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGG                          >  1:2772047/1‑101 (MQ=1)                                                                                AGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGGCTTGCGCACCGG                          >  2:1005840/1‑101 (MQ=1)                                                                                 GGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGC                         >  1:1321029/1‑101 (MQ=1)                                                                                 GGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGC                         >  1:3140509/1‑101 (MQ=1)                                                                                  GCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCT                        >  2:2156935/1‑101 (MQ=1)                                                                                  GCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGGCTTGCGCACCGGCT                        >  1:2118444/1‑101 (MQ=1)                                                                                   CCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCGAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTT                       <  1:567573/101‑1 (MQ=1)                                                                                   CCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTT                       >  2:463070/1‑101 (MQ=1)                                                                                   CCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTT                       >  1:2610414/1‑101 (MQ=1)                                                                                    CAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTG                      <  2:363466/101‑1 (MQ=1)                                                                                     AAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGA                     >  1:1163243/1‑101 (MQ=1)                                                                                        gGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACG                  <  2:3380879/100‑1 (MQ=1)                                                                                        AGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGTGCACCGGCTTGAACG                  <  2:2827587/101‑1 (MQ=1)                                                                                        AGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACG                  >  2:3821155/1‑101 (MQ=1)                                                                                        AGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACG                  >  2:1996788/1‑101 (MQ=1)                                                                                        AGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACG                  >  2:1274699/1‑101 (MQ=1)                                                                                        AGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACG                  >  2:1631782/1‑101 (MQ=1)                                                                                          GGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCc                >  2:1469912/1‑100 (MQ=1)                                                                                           GGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCAT               <  1:3164831/101‑1 (MQ=1)                                                                                            GGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATA              <  1:2966969/101‑1 (MQ=1)                                                                                             GGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAAaccctaa             >  1:526511/1‑94 (MQ=0)                                                                                             GGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAA             <  2:363532/101‑1 (MQ=1)                                                                                              GCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAA            <  2:3002466/101‑1 (MQ=1)                                                                                               CAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAG           >  2:3808747/1‑101 (MQ=1)                                                                                                AGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAGC          >  1:3588944/1‑101 (MQ=1)                                                                                                AGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAGC          >  2:2551189/1‑101 (MQ=1)                                                                                                 GCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAGCG         >  1:3686316/1‑101 (MQ=1)                                                                                                  CGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCCTAAAGCGC        >  2:2203147/1‑101 (MQ=1)                                                                                                  CGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAGCGC        >  1:4547370/1‑101 (MQ=1)                                                                                                  CGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAGCGC        <  2:1373047/101‑1 (MQ=1)                                                                                                                                                                                                              TCGCAAGGGCGTATTTGGACCAAGAAAAAGCGGGCGTGTTTTTTCTTGGTGAAAATACGCCGGGGGGAGACTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCC....................................................................................................  >  NC_014034/565233‑565336 ...................................................................................................CCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAGCGCGCCGAG  >  NC_014034/1303939‑1304038 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG