New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 565336	239 (1.050)	59 (0.260)	17/192	25.3	0.32	intergenic (+151/+11)	RCAP_rcc00526/RCAP_rcc00527	dimethylglycine dehydrogenase/family 25 glycosyl hydrolase
	?	NC_014034	2600956 =	9 (0.040)					intergenic (+18/‑123)	RCAP_rcc02424/surE	short‑chain dehydrogenase/reductase family oxidoreductase/5'‑nucleotidase SurE
Rejected: Position hash score below cutoff.

TCGCAAGGGCGTATTTGGACCAAGAAAAAGCGGGCGTGTTTTTTCTTGGTGAAAATACGCCGGGGGGAGACTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCC....................................................................................................  >  NC_014034/565233‑565336 ....................................................................................................CCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATCAGAC  >  NC_014034/2600956‑2601055                                                                                                                                                                                                                                                                                  gaaTTGGCCAAAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTT                                    <  1:3683916/98‑1 (MQ=0)                                                                      aaTTGGCCAAAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTG                                   >  1:2711648/3‑101 (MQ=255)                                                                        TTGGCCAAAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCACCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCT                                 <  1:4559569/101‑1 (MQ=255)                                                                         TGGCCAAAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTT                                >  2:3702484/1‑101 (MQ=9)                                                                          GGCCAAAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCCTG                               >  2:3991762/1‑101 (MQ=255)                                                                          GGCCAAAGG.CAAGAAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTG                               <  1:3122464/101‑1 (MQ=12)                                                                           GCCAAAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGT                              >  1:275509/1‑101 (MQ=0)                                                                            ccaAAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTT                             >  2:2419157/4‑101 (MQ=2)                                                                            ccaAAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTT                             >  2:4245278/4‑101 (MQ=2)                                                                            ccaAAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTT                             >  1:994692/4‑101 (MQ=2)                                                                              aagGGCCAAG.GGGGGGCGGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTG                           <  1:3565200/98‑1 (MQ=9)                                                                              aAAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTG                           >  2:2779339/2‑101 (MQ=11)                                                                              aAAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTG                           >  1:2086094/2‑101 (MQ=11)                                                                              aAAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTG                           >  2:1141777/2‑101 (MQ=11)                                                                              aAAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTG                           >  2:658358/2‑101 (MQ=11)                                                                              aAAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTG                           >  1:691114/2‑101 (MQ=11)                                                                               AAGGCCAAGA.GGGGGCGGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGG                          <  2:3780221/101‑1 (MQ=17)                                                                               AAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGG                          <  2:2297492/101‑1 (MQ=11)                                                                                AGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTTCTTGTTTGGg                         >  2:1995570/1‑100 (MQ=9)                                                                                AGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGC                         >  2:908266/1‑101 (MQ=14)                                                                                AGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGC                         >  1:102169/1‑101 (MQ=14)                                                                                AGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGAGCGCCAAGTGCAGCGGCTTGCTTGTTTGGC                         >  1:1952299/1‑101 (MQ=9)                                                                                 GGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCg                        >  2:725323/1‑100 (MQ=11)                                                                                 GGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCT                        <  1:490912/101‑1 (MQ=11)                                                                                 GGCCAAG.GGGGGGCAGCGCCCCCGGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCT                        <  2:4368986/101‑1 (MQ=0)                                                                                   CCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGC                      >  1:3441205/1‑101 (MQ=11)                                                                                    CAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCG                     >  2:3121330/1‑101 (MQ=11)                                                                                     caagGGGGGGCAGCCCCCCCGGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCG                     <  1:1266211/97‑1 (MQ=2)                                                                                       agaGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTTGCTGCGGC                   >  2:1193394/4‑101 (MQ=1)                                                                                       agaGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGC                   >  1:4516354/4‑101 (MQ=1)                                                                                        gGGGGGGCAGCCCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCG                  <  1:1211977/100‑1 (MQ=1)                                                                                        gGGGGGGCAGCCCCCCCGGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCG                  <  1:4264293/100‑1 (MQ=0)                                                                                         aGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGC                 >  2:3669882/2‑101 (MQ=1)                                                                                         GGGGGGCGGCCCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGC                 <  2:2125899/101‑1 (MQ=14)                                                                                          GGGGGCGGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCACGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCA                <  2:1360401/101‑1 (MQ=17)                                                                                          GGGGGCCGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCA                <  2:1997911/101‑1 (MQ=1)                                                                                          GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCc                >  1:3470437/1‑100 (MQ=1)                                                                                           GGGGCGGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAG               <  1:4511998/101‑1 (MQ=32)                                                                                           GGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTTGGTGCGGCGCAG               >  2:3581235/1‑101 (MQ=0)                                                                                            gggcgcccCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGC              <  1:2586551/93‑1 (MQ=2)                                                                                            GGGCCGCCCCCCCTCCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGC              <  2:2097712/101‑1 (MQ=0)                                                                                            GGGCAGCGCCCCGTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGC              >  1:2531011/1‑101 (MQ=1)                                                                                            GGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGC              <  2:4132522/101‑1 (MQ=1)                                                                                            GGGCAGCCCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGC              <  1:3477147/101‑1 (MQ=1)                                                                                               cggccCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGC           <  1:18024/96‑1 (MQ=11)                                                                                               cgGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGC           >  2:1928509/3‑101 (MQ=31)                                                                                               CAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGC           >  1:3769159/1‑101 (MQ=1)                                                                                               CAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGC           >  1:68442/1‑101 (MQ=1)                                                                                                cgccCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCT          <  1:4646108/97‑1 (MQ=11)                                                                                                ccccCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCT          <  2:3603484/97‑1 (MQ=11)                                                                                                AGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCCGCGCAGCGGCT          >  1:767549/1‑101 (MQ=1)                                                                                                AGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGGTTGGCTGCGGCGCAGCGGac          >  1:4572857/1‑99 (MQ=1)                                                                                                 gccCCCCCCCCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTA         <  1:458279/98‑1 (MQ=2)                                                                                                   cCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAAT       <  1:1603947/100‑1 (MQ=11)                                                                                                   cCCCCCGGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAAT       <  2:779262/100‑1 (MQ=11)                                                                                                   GCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCCGCGGGTAAT       >  1:4320237/1‑101 (MQ=0)                                                                                                    CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTTCTTGTTTGGCTGCGGCGCAGCGGCTAATC      >  1:883967/1‑101 (MQ=1)                                                                                                    CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATC      <  1:3121574/101‑1 (MQ=1)                                                                                                    CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATC      >  2:4292472/1‑101 (MQ=1)                                                                                                                                                                                                              TCGCAAGGGCGTATTTGGACCAAGAAAAAGCGGGCGTGTTTTTTCTTGGTGAAAATACGCCGGGGGGAGACTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCC....................................................................................................  >  NC_014034/565233‑565336 ....................................................................................................CCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATCAGAC  >  NC_014034/2600956‑2601055 Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG