New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 576627 =210 (0.950)2 (0.010) 2/186 37.3 0.01 coding (951/1221 nt) RCAP_rcc00534 hypothetical protein
?NC_014034 1604326 = 197 (0.830)coding (995/1485 nt) murE UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase
Rejected: Position hash score below cutoff.

CCAGACCCGGCCAGCGGCCATAGACCTTGCCGCCCTTCAGCGCACCGCCCGCCATCACCAGCGCGCCGCCGGTGCCGTGATCGGTCCCCCCGCTGCCGTTCTGCCGC....................................................................................................  <  NC_014034/576733‑576627
....................................................................................................CTGCCGCAACTTGCAACCGTGCGCGGCCGGATGCAGCTGGCCGCGACGCGCACGAATGGCGCCACCGTCTTCGTCGATTACGCCCATACGCCCGATGCGGTCGAAAC  >  NC_014034/1604326‑1604425
                                                                                                                                                                                                               
                                                                       atctCGTGATCGGTCCCCCCGCTGCCGTTCTGCCGCAACTTGCAACCGTGCGCGGCCGGATGCAGCTGGCCGCGACGCGCACGAATGGCGCCACCGTCTTC                                     <  1:1448059/97‑1 (MQ=255)
                                                                           CGTGATCGGTCCCCCCGCTGCCGTTCTGCCGCAACTTGCAACCGTGCGCGGCCGGATGCAGCTGGCCGCGACGCGCACGAATGGCGCCACCGTCTTCagat                                 >  2:1447964/1‑97 (MQ=255)
                                                                                                                                                                                                               
CCAGACCCGGCCAGCGGCCATAGACCTTGCCGCCCTTCAGCGCACCGCCCGCCATCACCAGCGCGCCGCCGGTGCCGTGATCGGTCCCCCCGCTGCCGTTCTGCCGC....................................................................................................  <  NC_014034/576733‑576627
....................................................................................................CTGCCGCAACTTGCAACCGTGCGCGGCCGGATGCAGCTGGCCGCGACGCGCACGAATGGCGCCACCGTCTTCGTCGATTACGCCCATACGCCCGATGCGGTCGAAAC  >  NC_014034/1604326‑1604425

Base quality scores:  ATCG  < 3 ≤  ATCG  < 27 ≤  ATCG  < 32 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG