New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 616687 =207 (0.960)2 (0.010) 2/182 36.9 0.01 coding (1904/2244 nt) cbbO rubisco activation protein CbbO
?NC_014034 1173706 = 220 (0.930)coding (1127/1188 nt) RCAP_rcc01097 hypothetical protein
Rejected: Position hash score below cutoff.

ATCCTTTCGCGCTGCACGGCTTTTGCTCGGACGGGCGGCACAATGTGTTTTATCAGCGTTTCAAGGACTTTGCCGAGGTGTGGGGGCCCGGCCCCAAGGCCCGGCTGGC....................................................................................................  <  NC_014034/616795‑616687
....................................................................................................CCGGCTGGCTCGGCGGCTACAACTTCCAGTGGGCCTGGTCCTCGGCCTGGGCGGCGGCGCAGGTGTTGTGAGCGGGCAGGGGCGCTGCCCCCCCCCTCTTGGCCTGCGT  >  NC_014034/1173706‑1173805
                                                                                                                                                                                                                 
                                    atctCAATGTGTTTTATCAGCGTTTCAAGGACTTTGCCGAGGTGTGGGGGCCCGGCCCCAAGGCCCGGCTGGCTCGGCGGCTACAACTTCCAGTGGGCCTG                                                                          <  1:4603549/97‑1 (MQ=255)
                                        CAATGTGTTTTATCAGCGTTTCAAGGACTTTGCCGAGGTGTGGGGGCCCGGCCCCAAGGCCCGGCTGGCTCGGCGGCTACAACTTCCAGTGGGCCTGagat                                                                      >  2:4603248/1‑97 (MQ=255)
                                                                                                                                                                                                                 
ATCCTTTCGCGCTGCACGGCTTTTGCTCGGACGGGCGGCACAATGTGTTTTATCAGCGTTTCAAGGACTTTGCCGAGGTGTGGGGGCCCGGCCCCAAGGCCCGGCTGGC....................................................................................................  <  NC_014034/616795‑616687
....................................................................................................CCGGCTGGCTCGGCGGCTACAACTTCCAGTGGGCCTGGTCCTCGGCCTGGGCGGCGGCGCAGGTGTTGTGAGCGGGCAGGGGCGCTGCCCCCCCCCTCTTGGCCTGCGT  >  NC_014034/1173706‑1173805

Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 31 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG