New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 66883213 (0.940)2 (0.010) 2/190 37.8 0.01 coding (2050/2088 nt) flhA flagellar biosynthesis protein FlhA
?NC_014034 525157 = 236 (0.990)coding (1031/1146 nt) ldc lysine/ornithine decarboxylase
Rejected: Position hash score below cutoff.

TCCCGGCCATCGTCACCTCGACCCGGCGGCGGCGGTTCCTCAAGACGGTGCTGGGCGCCAAGGGCATCCTGGCCCCCGTGCTCAGCTTCGAGGAAATTGGCCTCG....................................................................................................  >  NC_014034/66779‑66883
....................................................................................................CCTCGGACAGTTCGGCGGGAAGGGCGACATCCCCCGGCAGCCGGTCGACCGAATCGCAGGTCGGGCCGAAGACGATGCGCTCGACCATGTCGCCGCCGCGTTCGA  >  NC_014034/525157‑525256
                                                                                                                                                                                                             
                                                                        CCCCCGTGCTCAGCTTCGAGGAAATTGGCCTCGGACAGTTCGGCGGGAAGGGCGACATCCCCCGGCAGCCGGTCGACCGAATCGCAGGTCGGGCCGAAGAC                                  >  2:3639745/1‑101 (MQ=255)
                                                                           CCGTGCTCAGCTTCGAGGAAATTGGCCTCGGACAGTTCGGCGGGAAGGGCGACATCCCCCGGCAGCCGGTCGACCGAATCGCAGGTCGGGCCGAAGACGAT                               <  1:3640013/101‑1 (MQ=255)
                                                                                                                                                                                                             
TCCCGGCCATCGTCACCTCGACCCGGCGGCGGCGGTTCCTCAAGACGGTGCTGGGCGCCAAGGGCATCCTGGCCCCCGTGCTCAGCTTCGAGGAAATTGGCCTCG....................................................................................................  >  NC_014034/66779‑66883
....................................................................................................CCTCGGACAGTTCGGCGGGAAGGGCGACATCCCCCGGCAGCCGGTCGACCGAATCGCAGGTCGGGCCGAAGACGATGCGCTCGACCATGTCGCCGCCGCGTTCGA  >  NC_014034/525157‑525256

Base quality scores:  ATCG  < 3 ≤  ATCG  < 16 ≤  ATCG  < 20 ≤  ATCG  < 31 ≤  ATCG  < 39 ≤  ATCG