New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 671798216 (0.990)3 (0.010) 3/184 35.9 0.01 coding (321/831 nt) RCAP_rcc00623 RpiR family transcriptional regulator
?NC_014034 = 3699113 221 (0.930)coding (585/714 nt) rph ribonuclease PH
Rejected: Position hash score below cutoff.

CGGCGGGCCTCGGATCAGCGCGACGAACGGCTGTCGCAGGGGCTGAAGGCCGAGATCGCCGGGCTGGTGGGGGTTTACGAACTGGCCCGGACCGAGGCCTGGGCGCGG....................................................................................................  >  NC_014034/671691‑671798
....................................................................................................GGGCGCGGCCGTCTGGTCGAGGTGCAGATGACCGCCGAGGGCTCGACCTTCTCGCGCGAAGAGATGACGAAATTGCTCGATCTGGCCGAGGCCGGGGTGGCGCAGCTC  <  NC_014034/3699113‑3699014
                                                                                                                                                                                                                
                                                GCCGAGATCGCCGGGCTGGTGGGGGTTTACGAACTGGCCCGGACCGAGGCCTGGGCGCGGCCGTCTGGTCGAGGTGCAGATGACCGCCGCGGGCTCGACCT                                                             >  2:475657/1‑101 (MQ=255)
                                                                               AACTGGCCCGGACCGAGGCCTGGGCGCGGCCGTCTGGTCGAGGTGCAGATGACCGCCGAGGGCTCGACCTTCTCGCGCGAAGAGATGACGAAATTGCTCGA                              <  1:475705/101‑1 (MQ=255)
                                                                                                 tCTGGGCGCGGCCGTCTGGTCGTGGTGCAGATGACCGCCGAGGGCTCGACCTTCTCGCGCGAAGAGATGACGAAATTGCTCGATCTGGCCGAGGCCGGGGT            <  2:793525/100‑1 (MQ=255)
                                                                                                                                                                                                                
CGGCGGGCCTCGGATCAGCGCGACGAACGGCTGTCGCAGGGGCTGAAGGCCGAGATCGCCGGGCTGGTGGGGGTTTACGAACTGGCCCGGACCGAGGCCTGGGCGCGG....................................................................................................  >  NC_014034/671691‑671798
....................................................................................................GGGCGCGGCCGTCTGGTCGAGGTGCAGATGACCGCCGAGGGCTCGACCTTCTCGCGCGAAGAGATGACGAAATTGCTCGATCTGGCCGAGGCCGGGGTGGCGCAGCTC  <  NC_014034/3699113‑3699014

Base quality scores:  ATCG  < 3 ≤  ATCG  < 8 ≤  ATCG  < 18 ≤  ATCG  < 27 ≤  ATCG  < 38 ≤  ATCG