New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 68013227 (1.090)2 (0.010) 2/176 36.3 0.01 coding (323/1089 nt) flhB flagellar biosynthetic protein FlhB
?NC_014034 = 3383047 207 (0.870)coding (798/1650 nt) RCAP_rcc03185 hypothetical protein
Rejected: Position hash score below cutoff.

TTCGGTGCAACTTCTGGGCGGTGGCACGGTGGTCGCGGGCAACATTCTGGGGCGCATGGCCTTGACGGTTGCGCCCTGGTTGCTGTTGCCCGGCGTTCTGGTTCTGGCGGC....................................................................................................  >  NC_014034/67903‑68013
...................................................................................................GGTTCTGGCGGCGCCGAAACATGTGGCGGCGACGCTGGTGGCGCTGATGACGGTGATCTTTCTGCGCCAGTCCGGGCGCGGCGCCGAGGGGCTGGCGCTGCTCTGGCTGGTG  <  NC_014034/3383047‑3382948
                                                                                                                                                                                                                   
                                                                      ctGCCCTGGTTGCTGTTGCCCGGCGTTCTGGTTCTGGCGGCGCCGAAACATGTGGCGGCGACGCTGGTGGCGCTGATGACGGTGATCTTTCTGCGCCAGTC                                          <  1:3669222/99‑1 (MQ=255)
                                                                        GCCCTGGTTGCTGTTGCCCGGCGTTCTGGTTCTGGCGGCGCCGAAACATGTGGCGGCGACGCTGGTGGCGCTGATGACGGTGATCTTTCTGCGCCAGTCag                                        >  2:3668947/1‑99 (MQ=255)
                                                                                                                                                                                                                   
TTCGGTGCAACTTCTGGGCGGTGGCACGGTGGTCGCGGGCAACATTCTGGGGCGCATGGCCTTGACGGTTGCGCCCTGGTTGCTGTTGCCCGGCGTTCTGGTTCTGGCGGC....................................................................................................  >  NC_014034/67903‑68013
...................................................................................................GGTTCTGGCGGCGCCGAAACATGTGGCGGCGACGCTGGTGGCGCTGATGACGGTGATCTTTCTGCGCCAGTCCGGGCGCGGCGCCGAGGGGCTGGCGCTGCTCTGGCTGGTG  <  NC_014034/3383047‑3382948

Base quality scores:  ATCG  < 3 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG