New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	681121 =	14 (0.070)	45 (0.240)	15/160	22.9	0.33	coding (2486/6438 nt)	RCAP_rcc00630	ice nucleation protein repeat family protein
	?	NC_014034	= 2232351	166 (0.700)					coding (2157/2772 nt)	RCAP_rcc02068	ice nucleation protein repeat family protein
Rejected: Position hash score below cutoff.

CGGGCTGACCTCGGCGCAGATGGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGT...................................................................................................  <  NC_014034/681240‑681121 ....................................................................................................CTCGGCACCGATGACATCGTGGCGCTGACGACCGGTCAGGCCGCCGCGCTGAGCTCGACGCAGGTGGCGGCGCTCAGCACGGCGCAGATCTCCGCGCTGCAGACGGCGGATTTCGCCGC  <  NC_014034/2232351‑2232253                                                                                                                                                                                                                                                 TGGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTG                                                                                                    <  1:4408468/101‑1 (MQ=1)                     TGGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTG                                                                                                    <  1:2652255/101‑1 (MQ=1)                      GGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGG                                                                                                   >  2:1206446/1‑101 (MQ=1)                      GGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGG                                                                                                   >  1:833544/1‑101 (MQ=1)                       GCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGC                                                                                                  <  2:3595334/101‑1 (MQ=1)                       GCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGC                                                                                                  >  2:657350/1‑101 (MQ=1)                        CCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCG                                                                                                 >  1:2384733/1‑101 (MQ=1)                         CGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGC                                                                                                >  2:3760670/1‑101 (MQ=1)                          GCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCT                                                                                               >  2:2748494/1‑101 (MQ=1)                           CGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTG                                                                                              <  1:2296602/101‑1 (MQ=1)                            GCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGA                                                                                             <  2:245392/101‑1 (MQ=1)                            GCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGA                                                                                             <  1:2285044/101‑1 (MQ=1)                             CTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGAC                                                                                            <  1:1785196/101‑1 (MQ=1)                             CTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGCCCTCGGCACCGATGACATCGTGGCGCTGAg                                                                                            >  2:3315582/1‑100 (MQ=1)                              TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                           >  1:3194457/1‑101 (MQ=1)                              TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                           >  1:2330521/1‑101 (MQ=1)                               GAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGA                                                                                          >  2:3443084/1‑101 (MQ=1)                               GAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGA                                                                                          <  1:2245014/101‑1 (MQ=1)                               GAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGA                                                                                          >  1:2048137/1‑101 (MQ=1)                               GAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGA                                                                                          >  1:193633/1‑101 (MQ=1)                               GAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGA                                                                                          >  2:2264202/1‑101 (MQ=1)                                AGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGAC                                                                                         <  1:768814/101‑1 (MQ=1)                                 GCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACg                                                                                        >  1:3260145/1‑100 (MQ=1)                                 GCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCATCGGCACCGATGACATCGTGGCGCTAACGACg                                                                                        >  2:2776385/1‑100 (MQ=0)                                  CACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCATTGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACgg                                                                                       <  2:4037655/101‑3 (MQ=1)                                  CACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACgg                                                                                       >  1:2105024/1‑99 (MQ=1)                                   ACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACggc                                                                                      >  1:1613432/1‑98 (MQ=1)                                    CGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACggcg                                                                                     <  2:4181603/101‑5 (MQ=1)                                    CGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACggcg                                                                                     <  1:1154046/101‑5 (MQ=1)                                    CGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACggcg                                                                                     <  1:1892995/101‑5 (MQ=1)                                    CGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACggcg                                                                                     >  1:4575800/1‑97 (MQ=1)                                     GACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACggcgc                                                                                    >  2:3294009/1‑96 (MQ=1)                                     GACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACggcgc                                                                                    >  1:1556247/1‑96 (MQ=1)                                      ACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACggcgca                                                                                   <  2:2230505/101‑7 (MQ=1)                                       CGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACggcgcag                                                                                  <  2:1736550/101‑8 (MQ=1)                                       CGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACggcgcag                                                                                  <  2:2361205/101‑8 (MQ=1)                                       CGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGACAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACggcgcag                                                                                  <  1:3921526/101‑8 (MQ=1)                                        GCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACggcgcagg                                                                                 >  2:3856732/1‑93 (MQ=1)                                        GCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACggcgcagg                                                                                 <  2:596007/101‑9 (MQ=1)                                         CAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGC                                                                                >  2:2906803/1‑101 (MQ=1)                                         CAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGC                                                                                <  1:2447497/101‑1 (MQ=1)                                         CAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGC                                                                                >  1:1787806/1‑101 (MQ=1)                                         CAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGAGCAGGC                                                                                >  2:2779224/1‑101 (MQ=1)                                           GCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCgg                                                                              >  1:666890/1‑99 (MQ=11)                                           GCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCgg                                                                              >  1:639690/1‑99 (MQ=11)                                                                                                                                                                                                                             CGGGCTGACCTCGGCGCAGATGGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGT...................................................................................................  <  NC_014034/681240‑681121 ....................................................................................................CTCGGCACCGATGACATCGTGGCGCTGACGACCGGTCAGGCCGCCGCGCTGAGCTCGACGCAGGTGGCGGCGCTCAGCACGGCGCAGATCTCCGCGCTGCAGACGGCGGATTTCGCCGC  <  NC_014034/2232351‑2232253 Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 31 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG