New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 681121 =58 (0.240)83 (0.350) 34/200 17.9 0.39 coding (2486/6438 nt) RCAP_rcc00630 ice nucleation protein repeat family protein
?NC_014034 = 681936 201 (0.850)coding (1671/6438 nt) RCAP_rcc00630 ice nucleation protein repeat family protein
Rejected: Position hash score below cutoff.

TGGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGT....................................  <  NC_014034/681220‑681121
....................................................................................................GGCGCTGACGACGGCGCAGGCGCGGGCGCTGAAATC  <  NC_014034/681936‑681901
                                                                                                                                        
TGGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTG                                     <  1:4408468/101‑1 (MQ=1)
TGGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTG                                     <  1:2652255/101‑1 (MQ=1)
 GGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGG                                    >  1:833544/1‑101 (MQ=1)
 GGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGG                                    >  2:1206446/1‑101 (MQ=1)
  GCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGC                                   <  2:3595334/101‑1 (MQ=1)
  GCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGC                                   >  2:657350/1‑101 (MQ=1)
   CCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCG                                  >  1:2384733/1‑101 (MQ=1)
    CGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGC                                 >  2:3760670/1‑101 (MQ=1)
     GCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCT                                >  2:2748494/1‑101 (MQ=1)
      CGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTG                               <  1:2296602/101‑1 (MQ=1)
       GCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGA                              <  2:245392/101‑1 (MQ=1)
       GCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGA                              <  1:2285044/101‑1 (MQ=1)
        CTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGAC                             <  1:1785196/101‑1 (MQ=1)
        CTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGCCCTCGGCACCGATGACATCGTGGCGCTGAg                             >  2:3315582/1‑100 (MQ=1)
         TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                            >  1:3194457/1‑101 (MQ=1)
         TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                            >  1:2330521/1‑101 (MQ=1)
          GAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGA                           <  1:2245014/101‑1 (MQ=1)
          GAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGA                           >  1:2048137/1‑101 (MQ=1)
          GAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGA                           >  1:193633/1‑101 (MQ=1)
          GAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGA                           >  2:2264202/1‑101 (MQ=1)
          GAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGA                           >  2:3443084/1‑101 (MQ=1)
           AGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGAC                          <  1:768814/101‑1 (MQ=1)
            GCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACG                         >  1:3260145/1‑101 (MQ=1)
            GCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCATCGGCACCGATGACATCGTGGCGCTAACGACG                         >  2:2776385/1‑101 (MQ=0)
             CACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCATTGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGG                        <  2:4037655/101‑1 (MQ=1)
             CACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGG                        >  1:2105024/1‑101 (MQ=1)
              ACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGC                       >  1:1613432/1‑101 (MQ=1)
               CGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCG                      <  2:4181603/101‑1 (MQ=1)
               CGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCG                      >  1:4575800/1‑101 (MQ=1)
               CGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCG                      <  1:1154046/101‑1 (MQ=1)
               CGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCG                      <  1:1892995/101‑1 (MQ=1)
                GACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGGGTGCCAATGCGATCAAGGGGCTGGGCACCGATGACATCGTGGCGCTGACGACGGCGC                     >  1:3987090/1‑101 (MQ=0)
                GACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGC                     >  2:3294009/1‑101 (MQ=1)
                GACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGC                     >  1:1556247/1‑101 (MQ=1)
                 ACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCA                    <  2:2230505/101‑1 (MQ=1)
                  CGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAG                   <  2:1736550/101‑1 (MQ=1)
                  CGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAG                   <  2:2361205/101‑1 (MQ=1)
                  CGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGACAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAG                   <  1:3921526/101‑1 (MQ=1)
                   GCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGG                  <  2:596007/101‑1 (MQ=1)
                   GCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGG                  >  2:3856732/1‑101 (MQ=1)
                    CAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGC                 >  1:1787806/1‑101 (MQ=1)
                    CAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGC                 <  1:2447497/101‑1 (MQ=1)
                    CAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGC                 >  2:2906803/1‑101 (MQ=1)
                    CAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGAGCAGGC                 >  2:2779224/1‑101 (MQ=1)
                      GCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGg               >  1:666890/1‑100 (MQ=11)
                      GCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGg               >  1:639690/1‑100 (MQ=11)
                        TTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGgcg             <  2:3506264/101‑4 (MQ=32)
                         TGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGgcgg            >  1:3181410/1‑97 (MQ=17)
                         TGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGgcgg            >  2:1771198/1‑97 (MQ=17)
                          GCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGgcggc           >  2:1076740/1‑96 (MQ=17)
                          GCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGgcggc           <  2:4405911/101‑6 (MQ=17)
                           CGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCG          >  1:4140683/1‑101 (MQ=17)
                           CGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCG          <  2:1406554/101‑1 (MQ=17)
                           CGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCG          >  1:1640517/1‑101 (MQ=17)
                           CGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCG          >  2:4483845/1‑101 (MQ=17)
                            GGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGgcggagc         >  2:1797461/1‑94 (MQ=17)
                             GCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCT        >  1:1627772/1‑101 (MQ=11)
                             GCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCT        <  2:3259900/101‑1 (MQ=11)
                             GCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCT        >  1:1619627/1‑101 (MQ=11)
                             GCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCT        <  2:2160026/101‑1 (MQ=11)
                             GCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCT        <  2:1488561/101‑1 (MQ=11)
                              CGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTG       <  2:2775417/101‑1 (MQ=0)
                              CGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTG       >  1:552206/1‑101 (MQ=0)
                               GCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGg      >  1:1372963/1‑100 (MQ=0)
                               GCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGg      <  1:1584194/101‑2 (MQ=0)
                               GCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGg      >  2:329572/1‑100 (MQ=0)
                               GCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGg      >  2:1393423/1‑100 (MQ=0)
                                CTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGgg     >  2:3202878/1‑99 (MQ=0)
                                 TGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGggg    >  2:4055597/1‑98 (MQ=0)
                                 TGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGggc    >  2:621395/1‑98 (MQ=0)
                                 TGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGggc    >  2:2607621/1‑98 (MQ=0)
                                 TGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGggc    <  2:2478767/101‑4 (MQ=0)
                                 TGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGggc    >  1:3678808/1‑98 (MQ=0)
                                  GAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGggct   <  2:1584919/101‑5 (MQ=2)
                                  GAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGggct   <  2:1549294/101‑5 (MQ=2)
                                  GAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGggct   >  1:3237185/1‑97 (MQ=2)
                                   AATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGGGGCGGTGggctc  >  2:4557405/1‑96 (MQ=255)
                                   AATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGggctc  >  2:3370734/1‑96 (MQ=9)
                                   AATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGggctc  >  1:3211355/1‑96 (MQ=9)
                                   AATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGggctc  >  1:995571/1‑96 (MQ=9)
                                   AATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGggctc  >  1:595946/1‑96 (MQ=9)
                                   AATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGggctc  >  1:439599/1‑96 (MQ=9)
                                   AATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGggctc  >  1:4081555/1‑96 (MQ=9)
                                                                                                                                        
TGGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGT....................................  <  NC_014034/681220‑681121
....................................................................................................GGCGCTGACGACGGCGCAGGCGCGGGCGCTGAAATC  <  NC_014034/681936‑681901

Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 31 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG