New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 707069 =232 (1.070)2 (0.010) 2/182 36.9 0.01 coding (1500/2337 nt) mcpX methyl‑accepting chemotaxis protein McpX
?NC_014034 = 732633 234 (0.990)coding (679/1578 nt) bchB light‑independent protochlorophyllide reductase subunit B
Rejected: Position hash score below cutoff.

GGCCGCGGTGCTGATCTCGCTGCTCGATCCGTCGATCGTCACCGAGGCCGCCTCGATCGTCAGCACGGTCCGGGCGATGCTGTCATTCGCCGCCCGCACCGAACGCGCC....................................................................................................  <  NC_014034/707177‑707069
....................................................................................................GAACGCGCCTGCAAGCAGCCCTTCACCAAGATCGTGCCGATCGGCGTTGGCGCCACCCGCGATTTCCTGGCGGAAGTGAGCAAGATCACCGGCCTGCCCGTCGTCACCG  <  NC_014034/732633‑732534
                                                                                                                                                                                                                 
                                           GAGGCCGCCTCGATCGTCAGCACGGTCCGGGCGATGCTGTCATTCGCCGCCCGCACCGAACGCGCCTGCAAGCAGCCCTTCACCAAGATCGTGCCGATCGG                                                                   >  1:3896739/1‑101 (MQ=255)
                                               CCGCCTCGATCGTCAGCACGGTCCGGGCGATGCTGTCATTCGCCGCCCGCACCGAACGCGCCTGCAAGCAGCCCTTCACCAAGATCGTGCCGATCGGCGTT                                                               <  2:3896454/101‑1 (MQ=255)
                                                                                                                                                                                                                 
GGCCGCGGTGCTGATCTCGCTGCTCGATCCGTCGATCGTCACCGAGGCCGCCTCGATCGTCAGCACGGTCCGGGCGATGCTGTCATTCGCCGCCCGCACCGAACGCGCC....................................................................................................  <  NC_014034/707177‑707069
....................................................................................................GAACGCGCCTGCAAGCAGCCCTTCACCAAGATCGTGCCGATCGGCGTTGGCGCCACCCGCGATTTCCTGGCGGAAGTGAGCAAGATCACCGGCCTGCCCGTCGTCACCG  <  NC_014034/732633‑732534

Base quality scores:  ATCG  < 3 ≤  ATCG  < 29 ≤  ATCG  < 31 ≤  ATCG  < 35 ≤  ATCG  < 40 ≤  ATCG