New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 723441233 (1.080)3 (0.010) 3/182 35.7 0.01 coding (167/489 nt) RCAP_rcc00657 hypothetical protein
?NC_014034 = 1334037 251 (1.060)intergenic (‑423/+123) RCAP_rcc01258/RCAP_rcc01259 hypothetical protein/hypothetical protein
Rejected: Position hash score below cutoff.

TCCAGCAGGATATTGCCCTCGGGGTCGGAGACGGTGGCGTGACGGGCGTCGATATCCTTGAGCACGACCAGCTTTTCGGCGACGACCTTGCCCGGGGCGGGCACGCCTT....................................................................................................  >  NC_014034/723333‑723441
....................................................................................................GCACGCCTTGCCTCACCTTTCACGGCAACGGCGTTCGTCGTCCTTTTGTTTGGAAAGAAACCCCCTCGTAAGCGGCAACCTTATTATATATATCGGGCCACCCCTTATC  <  NC_014034/1334037‑1333938
                                                                                                                                                                                                                 
                                                                CGACCAGCTTTTCGGCGACGACCTTGCCCGGGGCGGGCACGCCTTGCCTCACCTTTCACGGCAACGGCGTTCGTCGTCCTTTTGTTTGGAAAGAAACCCCC                                              >  2:1490890/1‑101 (MQ=255)
                                                                              GCGACGACCTTGCCCGGGGCGGGCACGCCTTGCCTCACCTTTCACGGCAACGGCGTTCGTCGTCCTTTTGTTTGGAAAGAAACCCCCTCGTAAGCGGCAAC                                <  1:1490999/101‑1 (MQ=255)
                                                                                                   GGCACGCCTTGCCTCACCTTTCACGGCAACGGCGTTCGTCGTCCTTTTGTTTGGAAAGAAACCCCCTCGTAAGCGGCAACCTTATTATATATATCGGGCCA           <  2:333489/101‑1 (MQ=255)
                                                                                                                                                                                                                 
TCCAGCAGGATATTGCCCTCGGGGTCGGAGACGGTGGCGTGACGGGCGTCGATATCCTTGAGCACGACCAGCTTTTCGGCGACGACCTTGCCCGGGGCGGGCACGCCTT....................................................................................................  >  NC_014034/723333‑723441
....................................................................................................GCACGCCTTGCCTCACCTTTCACGGCAACGGCGTTCGTCGTCCTTTTGTTTGGAAAGAAACCCCCTCGTAAGCGGCAACCTTATTATATATATCGGGCCACCCCTTATC  <  NC_014034/1334037‑1333938

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 26 ≤  ATCG  < 32 ≤  ATCG  < 40 ≤  ATCG