New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	744650 =	80 (0.340)	14 (0.060)	5/198	35.1	0.18	intergenic (+35/+177)	idi2/bchO	isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
	?	NC_014034	2330309 =	48 (0.200)					intergenic (+284/+28)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

AAAGCAGGGGTGGGACAGGCTGTACCGCCGCAGACGGAAAGTCATTCATTTCATCTTGCCCCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGG.................................................................................  <  NC_014034/744749‑744650 .....................................................................................................CGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATC  >  NC_014034/2330309‑2330388                                                                                                     |                                                                                 AAAGCAGGGGTGGGACAGGCTGTACCGCCGCAGACGGAAAGTCATTCATTTCATCTTGCCCCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGG                                                                                  >  1:4532702/1‑101 (MQ=33)   AGCAGGGGTGGGACAGGCTGTACCGCCGCAGACGGAAAGTCATTCATTTCATCTTGCCCCAAATATCCCGGGGGTCCGGGGGCGGCGCCCCCGGCGGGGCG                                                                                >  2:4164902/1‑101 (MQ=25)   AGCAGGGGTGGGACAGGCTGTACCGCCGCAGACGGAAAGTCATTCATTTCATCTTGCCCCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGGgg                                                                                >  1:836405/1‑99 (MQ=18)    GCAGGGGTGGGACAGGCTGTACCGCCGCAGACGGAAAGTCATTCATTTCATCTTGCCCCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGGTGC                                                                               >  2:3892020/1‑101 (MQ=18)     CAGGGGTGGGACAGGCTGTACCGCCGCAGACGGAAAGTCATTCATTTCATCTTGCCCCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGGCGCC                                                                              >  2:631339/1‑101 (MQ=35)      AGGGGTGGGACAGGCTGTACCGCCGCAGACGGAAAGTCATTCATTTCATCTTGCCCCAAATATCCCGGGGGTCCGGGGGCGGAGCCCTCGGCGGGGgcgct                                                                             >  1:3121064/1‑96 (MQ=255)      AGGGGTGGGACAGGCTGTACCGCCGCAGACGGAAAGTCATTCATTTCATCTTGCCCCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGGggggc                                                                             >  2:167442/1‑96 (MQ=18)      AGGGGTGGGACAGGCTGTACCGCCGCAGACGGAAAGTCATTCATTTCATCTTGCCCCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGGGGCCc                                                                             >  1:4281163/1‑100 (MQ=21)      AGGGGTGGGACAGGCTGTACCGCCGCAGACGGAAAGTCATTCATTTCATCTTGCCCCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGGCGCCc                                                                             >  1:4143839/1‑100 (MQ=25)       GGGGTGGGACAGGCTGTACCGCCGCAGACGGAAAGTCATTCATTTCATCTTGCCCCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGGCGCCcc                                                                            >  1:3580161/1‑99 (MQ=25)           TGGGACAGGCTGTACCGCCGCAGACGGAAAGTCATTCATTTCATCTTGCCCCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGGCGCCccgggg                                                                        >  1:310532/1‑95 (MQ=19)            GGGACAGGCTGTACCGCCGCAGACGGAAAGTCATTCATTTCATCTTGCCCCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGGCGCCcgccggc                                                                       >  1:447504/1‑94 (MQ=255)                                                             CCAAAGATCCGGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGA                      <  2:2870567/101‑1 (MQ=2)                                                             CCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGA                      <  2:651872/101‑1 (MQ=11)                                                                 agATCCCGGGGGTCCGGGGGCGGTGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGT                  <  1:4255922/99‑1 (MQ=11)                                                                     CCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCC              <  2:2229482/101‑1 (MQ=11)                                                                            ggCCGGGGGCGGGCCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCG       <  2:1616190/99‑1 (MQ=0)                                                                                 GGGGCGGACCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATC  <  2:2137317/101‑1 (MQ=1)                                                                                                     |                                                                                 AAAGCAGGGGTGGGACAGGCTGTACCGCCGCAGACGGAAAGTCATTCATTTCATCTTGCCCCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGG.................................................................................  <  NC_014034/744749‑744650 .....................................................................................................CGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATC  >  NC_014034/2330309‑2330388 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG