New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	744653 =	79 (0.350)	44 (0.200)	6/188	33.1	0.42	intergenic (+38/+174)	idi2/bchO	isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
	?	NC_014034	= 3701428	44 (0.190)					intergenic (+5/+44)	grpE/mutS	GrpE protein/DNA mismatch repair protein MutS
Rejected: Position hash score below cutoff.

TGCCAAGGAAAAGCAGGGGTGGGACAGGCTGTACCGCCGCAGACGGAAAGTCATTCATTTCATCTTGCCCCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGC....................................................................................................  <  NC_014034/744758‑744653 ....................................................................................................CCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGAATGATGTCAC  <  NC_014034/3701428‑3701329                                                                                                                                                                                                                                                                                   ctgaAAATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTG                                        >  2:4474751/5‑101 (MQ=25)                                                                     tgaAAATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGC                                       >  2:2129643/4‑101 (MQ=25)                                                                     tgaAAATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGC                                       >  1:640265/4‑101 (MQ=25)                                                                      gaAAATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCA                                      >  2:2596938/3‑101 (MQ=25)                                                                         AATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCA                                   >  2:1711145/1‑101 (MQ=35)                                                                          ATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAG                                  >  2:1523706/1‑101 (MQ=35)                                                                           TATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGGCTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGG                                 >  2:3728678/1‑101 (MQ=25)                                                                           TATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGG                                 >  2:4455376/1‑101 (MQ=35)                                                                           TATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGG                                 >  1:4047402/1‑101 (MQ=35)                                                                            ATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGA                                >  2:3487307/1‑101 (MQ=35)                                                                             TCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAA                               >  2:1032117/1‑101 (MQ=35)                                                                             TCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAA                               >  1:3791468/1‑101 (MQ=35)                                                                             TCCCGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAA                               >  1:3791467/1‑101 (MQ=1)                                                                              cctGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAG                              >  1:3537391/4‑101 (MQ=35)                                                                              cctGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAG                              >  2:3279311/4‑101 (MQ=35)                                                                               ctGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGC                             >  2:1699945/3‑101 (MQ=34)                                                                               ctGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGCCGTGCAGCAGGAAGC                             >  2:3090762/3‑101 (MQ=21)                                                                                    GGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCG                        >  2:1604829/1‑101 (MQ=32)                                                                                     GTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGT                       >  1:881469/1‑101 (MQ=32)                                                                                     GTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGT                       >  1:3552741/1‑101 (MQ=32)                                                                                       CCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGCCGGTCGTGCAGCAGGAAGCCGTCGTCC                     >  1:859755/1‑101 (MQ=17)                                                                                        CGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCA                    >  2:1614120/1‑101 (MQ=32)                                                                                        CGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCA                    >  2:1772284/1‑101 (MQ=32)                                                                                         GGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCAT                   >  1:994589/1‑101 (MQ=32)                                                                                         GGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCAT                   >  1:802229/1‑101 (MQ=32)                                                                                         GGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCAT                   >  2:3195203/1‑101 (MQ=32)                                                                                         GGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGAATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCAT                   >  2:386990/1‑101 (MQ=17)                                                                                          GGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATC                  >  1:1094090/1‑101 (MQ=32)                                                                                          GGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATC                  >  1:1924272/1‑101 (MQ=32)                                                                                          GGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATC                  >  1:2203075/1‑101 (MQ=32)                                                                                           GGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCA                 >  1:3676688/1‑101 (MQ=32)                                                                                            GGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCAC                >  1:1114539/1‑101 (MQ=32)                                                                                               gaAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTG             >  2:1764087/3‑101 (MQ=31)                                                                                               gaAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTG             >  2:3114197/3‑101 (MQ=31)                                                                                               ccccCCCCCCCCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTG             <  1:2739633/97‑1 (MQ=0)                                                                                                aAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGA            >  2:1521334/2‑101 (MQ=11)                                                                                                 AGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGAA           >  2:934800/1‑101 (MQ=1)                                                                                                 AGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGAA           >  2:839863/1‑101 (MQ=1)                                                                                                 AGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGAA           >  2:200465/1‑101 (MQ=1)                                                                                                  cCCCCCCCCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGAAT          <  2:4130223/100‑1 (MQ=0)                                                                                                  cCCCCCCCCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGAAT          <  2:336733/100‑1 (MQ=0)                                                                                                  GCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGAAT          >  1:2717053/1‑101 (MQ=1)                                                                                                  GCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGAAT          >  1:945932/1‑101 (MQ=1)                                                                                                   CCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGAATG         >  1:3811160/1‑101 (MQ=1)                                                                                                                                                                                                                TGCCAAGGAAAAGCAGGGGTGGGACAGGCTGTACCGCCGCAGACGGAAAGTCATTCATTTCATCTTGCCCCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGC....................................................................................................  <  NC_014034/744758‑744653 ....................................................................................................CCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGAATGATGTCAC  <  NC_014034/3701428‑3701329 Base quality scores:  ATCG  < 3 ≤  ATCG  < 21 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG