New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 836390 =216 (0.920)2 (0.010) 2/198 38.6 0.01 coding (498/546 nt) hoxW hydrogenase maturation factor HowW
?NC_014034 836943 = 198 (0.830)coding (432/1371 nt) hupT signal transduction histidine kinase HupT
Rejected: Position hash score below cutoff.

GCCCCAGCATATCGGGCCCGAAGCCCGGCGCAAGGGGCCCGGCCCTGCGGGGTCACTCGGCGGCAGAGCGGCGATCGTCGCTGGCGGGGAACAGATCCTCG....................................................................................................  <  NC_014034/836490‑836390
....................................................................................................GTCCGGGCGGTCCGGCGCCGCTGGAACTTTCGGTCAGCCCGCGGCTGGACGAGCGGGATCGCCTCATCGGCTATGTGCTGACCGGCCGCCCGCTGGGGGAA  >  NC_014034/836943‑837042
                                                                                                                                                                                                         
                                                                   GCGGCGATCGTCGCTGGCGGGGAACAGATCCTCGTCCGGGCGGTCCGGCGCCGCTGGAACTTTCGGTCAGCCCGCGGCTGGACGAGCGGGATCGCCTCATC                                   >  2:3817768/1‑101 (MQ=255)
                                                                             TCGCTGGCGGGGAACAGATCCTCGTCCGGGCGGTCCGGCGCCGCTGGAACTTTCGGTCAGCCCGCGGCTGGACGAGCGGGATCGCCTCATCGGCTATGTGC                         <  1:3818053/101‑1 (MQ=255)
                                                                                                                                                                                                         
GCCCCAGCATATCGGGCCCGAAGCCCGGCGCAAGGGGCCCGGCCCTGCGGGGTCACTCGGCGGCAGAGCGGCGATCGTCGCTGGCGGGGAACAGATCCTCG....................................................................................................  <  NC_014034/836490‑836390
....................................................................................................GTCCGGGCGGTCCGGCGCCGCTGGAACTTTCGGTCAGCCCGCGGCTGGACGAGCGGGATCGCCTCATCGGCTATGTGCTGACCGGCCGCCCGCTGGGGGAA  >  NC_014034/836943‑837042

Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 30 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG