New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 89608 =246 (1.160)2 (0.010) 2/178 36.5 0.01 coding (479/1407 nt) leuC 3‑isopropylmalate dehydratase large subunit
?NC_014034 = 3501398 211 (0.890)coding (196/1644 nt) RCAP_rcc03306 acyl‑CoA dehydrogenase, medium‑chain specific
Rejected: Position hash score below cutoff.

CGGTGCCGGTGAGGCCGATCACGGCCAGCGTGATGTCCTTGGCGGTGACGCCCGGACGCAGCTGGCCGGTGATTTCCACCTTCATGTTCTTCGATTTCTTCTGGATCAGCG....................................................................................................  <  NC_014034/89718‑89608
....................................................................................................CTGGATCAGCGACTGGTTGTAAGTCGCCAGCCAGGCAAGCGCATGGGCGGTGAACTGGTCTTCCTCCAGCGCGGCATTCGACACCTTGCCACCGCGGCTGACCTTGGTTTT  <  NC_014034/3501398‑3501299
                                                                                                                                                                                                                   
                                                                     TGATTTCCACCTTCATGTTCTTCGATTTCTTCTGGATCAGCGACTGGTTGTAAGTCGCCAGCCAGGCAAGCGCATGGGCGGTGAACTGGTCTTCCTCCAGC                                           >  2:4463522/1‑101 (MQ=255)
                                                                         TTCCACCTTCATGTTCTTCGATTTCTTCTGGATCAGCGACTGGTTGTAAGTCGCCAGCCAGGCAAGCGCATGGGCGGTGAACTGGTCTTCCTCCAGCGCGG                                       <  1:4463817/101‑1 (MQ=255)
                                                                                                                                                                                                                   
CGGTGCCGGTGAGGCCGATCACGGCCAGCGTGATGTCCTTGGCGGTGACGCCCGGACGCAGCTGGCCGGTGATTTCCACCTTCATGTTCTTCGATTTCTTCTGGATCAGCG....................................................................................................  <  NC_014034/89718‑89608
....................................................................................................CTGGATCAGCGACTGGTTGTAAGTCGCCAGCCAGGCAAGCGCATGGGCGGTGAACTGGTCTTCCTCCAGCGCGGCATTCGACACCTTGCCACCGCGGCTGACCTTGGTTTT  <  NC_014034/3501398‑3501299

Base quality scores:  ATCG  < 3 ≤  ATCG  < 27 ≤  ATCG  < 31 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG