| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_014034 | = 974307 | 2 (0.010) | 10 (0.040) | 7/188 | 32.2 | 0.18 | intergenic (+187/+72) | RCAP_rcc00884/RCAP_rcc00885 | hypothetical protein/hypothetical protein |
| ? | NC_014034 | = 1103377 | 90 (0.380) | intergenic (‑377/+41) | ugpB/regA2 | sn‑glycerol‑3‑phosphate‑binding periplasmic protein ugpB/photosynthetic apparatus regulatory protein RegA | |||||
| Rejected: Position hash score below cutoff. | |||||||||||
CCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGG.................................................................................................... > NC_014034/974203‑974307
....................................................................................................CCGGGGGTCCGGGGGCGGAGCCCCCGGCGGATCGCCGCGCGGCCGCGCGGCGAAATCGCCCCGAGGCGCCCCCCGCGTTCGGACCTCTCCGTCGCGGCGCCGGTCC < NC_014034/1103377‑1103278
GACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCCGGGG > 2:3814296/1‑101 (MQ=0)
CGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCG < 2:3453023/101‑1 (MQ=0)
CGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGGCCGGGGGgg > 2:3777778/1‑99 (MQ=0)
CGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGGCCGGGGGCG > 2:757891/1‑101 (MQ=0)
GTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGGCAAATATCCCGGGGGTCCGGGGGCGG > 2:981651/1‑101 (MQ=0)
GTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACCAATATCCCGGGGGTCCGGGGGCGG > 2:1350373/1‑101 (MQ=0)
ATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAG > 1:3383763/1‑101 (MQ=0)
ACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCG > 1:3302467/1‑101 (MQ=0)
ACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCG > 2:3365408/1‑101 (MQ=0)
CCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGGCCGGGGGCGGAGCCCCCGG > 2:740619/1‑101 (MQ=0)
CCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGG.................................................................................................... > NC_014034/974203‑974307
....................................................................................................CCGGGGGTCCGGGGGCGGAGCCCCCGGCGGATCGCCGCGCGGCCGCGCGGCGAAATCGCCCCGAGGCGCCCCCCGCGTTCGGACCTCTCCGTCGCGGCGCCGGTCC < NC_014034/1103377‑1103278
Base quality scores:
ATCG
< 3 ≤
ATCG
< 12 ≤
ATCG
< 20 ≤
ATCG
< 31 ≤
ATCG
< 41 ≤
ATCG
|