New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	158231 =	56 (0.240)	30 (0.130)	2/198	38.6	0.39	intergenic (+34/‑196)	parC/tuf1	DNA topoisomerase IV subunit A/translation elongation factor Tu
	?	NC_014034	1253896 =	37 (0.160)					intergenic (+54/+37)	RCAP_rcc01181/hisH	hypothetical protein/imidazole glycerol phosphate synthase subunit HisH
Rejected: Position hash score below cutoff.

GCAAGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCT  >  NC_014034/158133‑158331                                                                                                   |                                                                                                     gCAAGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCgggg                                                                                                    <  1:3247032/101‑1 (MQ=255) gCAAGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCgggg                                                                                                    <  1:2230775/101‑1 (MQ=255)  cAAGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCcgggc                                                                                                   >  2:3033388/1‑100 (MQ=255)   aaGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGc                                                                                                  <  2:1362372/101‑1 (MQ=255)   aaGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCCCgggggg                                                                                                  >  1:2304141/1‑100 (MQ=255)    aGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCcggccgg                                                                                                 >  2:672012/1‑97 (MQ=255)    aGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCt                                                                                                 <  2:833329/101‑1 (MQ=255)      cGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTcc                                                                                               <  1:3154870/101‑1 (MQ=255)        ggCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGc                                                                                             <  1:4309948/101‑1 (MQ=255)          cGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGccc                                                                                           <  2:4362751/101‑1 (MQ=255)           gAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGcccc                                                                                          <  1:2450127/101‑1 (MQ=255)            aGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGccccc                                                                                         <  2:4664806/101‑1 (MQ=255)            aGCGCCGGGCGGAGGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGccccc                                                                                         <  2:3274741/101‑1 (MQ=255)             gcgcCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCg                                                                                        <  2:2485604/101‑1 (MQ=255)                ccGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCAc                                                                                     <  2:4197749/101‑1 (MQ=255)                   ggCGGATGGCGCCGCGGGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCCCGGGGGCTCCGCCCCCGCAcccc                                                                                  <  1:2851723/101‑1 (MQ=255)                    gCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCAccccc                                                                                 <  2:3247259/101‑1 (MQ=255)                    gCGGATGGCGCCGCGCGGTTTCCCGCGCAAGACCCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCAccccc                                                                                 <  1:120491/101‑1 (MQ=255)                      ggATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCgg                                                                               <  1:1700025/101‑1 (MQ=255)                        aTGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCg                                                                             <  1:893014/101‑1 (MQ=255)                          ggCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTa                                                                           <  2:660108/101‑1 (MQ=255)                             gccgcGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTAttt                                                                        <  1:2949860/101‑1 (MQ=255)                             gccgcGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTAttt                                                                        <  1:1281937/101‑1 (MQ=255)                                   cgGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCaa                                                                  <  1:1128108/101‑1 (MQ=255)                                   cgGTTGCCCGCGCGACAACCGGGTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCaa                                                                  <  2:799993/101‑1 (MQ=255)                                    ggTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAg                                                                 <  1:293362/101‑1 (MQ=255)                                        tCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGaaa                                                             <  1:3903266/101‑1 (MQ=255)                                        tCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGaaa                                                             <  1:1619007/101‑1 (MQ=255)                                         cccGCGCGACAACCGGGTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGaaaa                                                            <  2:1169000/101‑1 (MQ=255)                                               cgACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAgg                                                      <  2:3027095/101‑1 (MQ=255)                                                  cAACCGGTTCCCCTGACGGGGTNTCGNGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGc                                                   <  1:4163224/101‑1 (MQ=255)                                                   aaCCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGca                                                  <  2:4657794/101‑2 (MQ=255)                                                    aCCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGccc                                                 <  1:550975/101‑1 (MQ=255)                                                    aCCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGccc                                                 <  1:1840385/101‑1 (MQ=255)                                                        gTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCg                                             <  2:2094862/101‑1 (MQ=255)                                                         ttCCCCTGACGGGGTTTCGGGCTGTGCCGCGACCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCgg                                            <  1:4146215/101‑1 (MQ=255)                                                           ccccTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGAc                                          <  2:983427/101‑1 (MQ=255)                                                              cTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACgtg                                       <  2:4212519/101‑1 (MQ=255)                                                              cTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACgtg                                       <  1:3306497/101‑1 (MQ=255)                                                                gACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTc                                     <  1:590811/101‑1 (MQ=255)                                                                gACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTc                                     <  2:4564513/101‑1 (MQ=255)                                                                 gcGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCg                                    <  1:2048120/100‑1 (MQ=255)                                                                 gcGGGGGTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCg                                    <  2:3687782/100‑1 (MQ=255)                                                                    gggTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGttt                                 <  1:3607299/101‑1 (MQ=255)                                                                      gTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCg                               <  2:2021784/101‑1 (MQ=255)                                                                          cGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGa                           <  2:1597340/101‑1 (MQ=255)                                                                           gggCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGAc                          <  2:4400186/101‑1 (MQ=255)                                                                                  gCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCt                   <  2:1146514/101‑1 (MQ=255)                                                                                     gcgcCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGcc                <  2:181649/101‑1 (MQ=255)                                                                                     gcgcCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGcc                <  1:2057366/101‑1 (MQ=255)                                                                                       gcCCGGCCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCt              <  1:630731/101‑1 (MQ=255)                                                                                       gcCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCt              <  1:1983597/101‑1 (MQ=255)                                                                                        cccGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTg             <  1:2666837/101‑1 (MQ=255)                                                                                         ccGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGATGTGTCGTTTCGGGGACGCGCGCTGCCCTgg            <  1:4148353/101‑1 (MQ=255)                                                                                            gcccGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAg         <  2:103294/100‑1 (MQ=255)                                                                                                  gggggCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCACTGCCCTGGCAGGCGGcc   >  1:2233593/1‑101 (MQ=255)                                                                                                   ggggCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAACGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCt  <  1:3246628/101‑1 (MQ=255)                                                                                                   ggggCTCCGCCCCCGCACCCCCGGCGAATTTTGCCAAGGAAAAGCAAGGGGCCCCCCGAACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCt  >  2:1825913/1‑101 (MQ=255)                                                                                                   |                                                                                                     GCAAGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCT  >  NC_014034/158133‑158331 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG