New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1395365 =162 (1.050)39 (0.250) 8/130 24.1 0.21 intergenic (+177/‑754) RCAP_rcc01306/RCAP_rcc01307 Cas2 family CRISPR‑associated protein/hypothetical protein
?NC_014034 = 1397934 139 (0.590)intergenic (+238/+1660) RCAP_rcc01307/RCAP_rcc01309 hypothetical protein/IS66 family transposase
Rejected: Position hash score below cutoff.

Only 100 of 256 total aligned reads displayed.

CCGGAGCACCTTGCGCTGCCGCTCCGGAGGCGCTTGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCCGGTGATCGGTG.ATCAGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAT  >  NC_014034/1395265‑1395467
                                                                                                    |                                                                                                       
ccGGAGCACCTTGCGCTGCCGCTCCGGAGGCGCTTGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAg                                                                                                         <  2:2972568/101‑1 (MQ=255)
ccGGAGCACCTTGCGCTGCCGCTCCGGAGGCGCTTGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAg                                                                                                         <  1:1638352/101‑1 (MQ=255)
 cGGAGCACCTTGCGCTGCCGCTCCGGAGGCGCTTGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAgc                                                                                                        >  2:4408244/1‑100 (MQ=255)
  ggAGCACCTTGCGCTGCCGCTCCGGAGGCGCTTGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTc                                                                                                       <  2:3034543/101‑1 (MQ=255)
   gAGCACCTTGCGCTGCCGCTCCGGAGGCGCTTGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCg                                                                                                      <  2:880555/101‑1 (MQ=255)
     gCACCTGGCGCTGCCGCTCCGGAGGCGCTTGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCt                                                                                                    <  2:3829770/101‑1 (MQ=255)
        ccTTGCGCTGCCGCTACGGAGGCGCTTGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTccc                                                                                                 >  1:3931357/1‑101 (MQ=255)
         cTTGCGCTGCCGCTCCGGAGGCGCTTGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTcccc                                                                                                <  2:710487/101‑1 (MQ=255)
           tGCGCTGCCGCTCCGGAGGCGCTTGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTcccccc                                                                                              >  2:1385220/1‑101 (MQ=255)
           tGCGCTGCCGCTCCGGAGGCGCTTGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTcccccc                                                                                              <  1:222380/101‑1 (MQ=255)
             cgcTGCCGCTCCGGAGGCGCTTGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCcgc                                                                                            <  1:772014/101‑1 (MQ=255)
                     cTCCGGAGGCGCTTGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGCCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCgg                                                                                    >  2:359656/1‑100 (MQ=255)
                      tCCGGAGGCGCTTGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTg                                                                                   <  2:2391353/101‑1 (MQ=255)
                      tCCGGAGGCGCTTGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTg                                                                                   >  1:287555/1‑101 (MQ=255)
                       ccGGAGGCGCTTGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTgg                                                                                  <  2:3465293/101‑1 (MQ=255)
                         ggAGGCGCTTGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGAt                                                                                <  2:3109192/101‑1 (MQ=255)
                         ggAGGCGCTTGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGAt                                                                                >  1:682514/1‑101 (MQ=255)
                           aGGCGCTTGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCg                                                                              <  2:676774/101‑1 (MQ=255)
                           aGGCGCTTGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCg                                                                              <  2:1153418/101‑1 (MQ=255)
                             gcgcTTGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGaa                                                                            <  1:737915/101‑1 (MQ=255)
                              cgcTTGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGaaa                                                                           <  2:3074845/101‑1 (MQ=255)
                                  tGCGACAAGCGCCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGc                                                                       <  2:3449542/101‑1 (MQ=255)
                                  tGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGc                                                                       <  2:2917243/101‑1 (MQ=255)
                                  tGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGc                                                                       <  1:4168590/101‑1 (MQ=255)
                                  tGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGc                                                                       >  1:3017478/1‑101 (MQ=255)
                                  tGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGc                                                                       >  1:1991616/1‑101 (MQ=255)
                                  tGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGc                                                                       >  2:4168302/1‑101 (MQ=255)
                                   gCGACAAGCACCTTCGCACCACCGGAGCAATTTTCACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCa                                                                      <  1:3976830/101‑1 (MQ=255)
                                   gCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCTCGGGGGCGTGGATCGAAACTGCa                                                                      >  2:1467914/1‑101 (MQ=255)
                                   gCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCTGGGGCGTGGATCGAAACTGCa                                                                      >  1:1144922/1‑101 (MQ=255)
                                    cGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCAc                                                                     <  1:4330052/101‑1 (MQ=255)
                                     gACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCAcc                                                                    <  1:3897445/101‑1 (MQ=255)
                                       cAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCg                                                                  >  2:1173707/1‑101 (MQ=255)
                                        aaGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGCGCCGCGGGCTACGAAACGGCAGTCCCTCCCCCGGGGGGGGGCTGGATCGCAACTGCAccccc                                                                 >  2:3883593/1‑99 (MQ=255)
                                          gCACCTTCGCACGACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTg                                                               >  1:2520547/1‑101 (MQ=255)
                                          gCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTg                                                               >  1:2413803/1‑101 (MQ=255)
                                          gCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTg                                                               >  1:1963776/1‑101 (MQ=255)
                                          gCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTAAGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTg                                                               <  1:1769628/101‑1 (MQ=255)
                                              cTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGccc                                                           >  1:3244454/1‑101 (MQ=255)
                                               ttCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCt                                                          <  2:1906187/101‑1 (MQ=255)
                                               ttCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCt                                                          >  2:1837436/1‑101 (MQ=255)
                                                tCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGATACGAAACGGCAGTCGCTCCCCCCTCGGGGGCGTGGATCGGAAATGCACCCGCCAGCCCTg                                                         >  2:3978216/1‑101 (MQ=255)
                                                  gCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGcc                                                       >  1:3507817/1‑101 (MQ=255)
                                                   caccacCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCcg                                                      >  2:2342682/1‑101 (MQ=255)
                                                    accaccGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCcgg                                                     >  2:1249333/1‑101 (MQ=255)
                                                    accaccGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCcgg                                                     <  1:1850195/101‑1 (MQ=255)
                                                     ccaccGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCcggg                                                    >  2:4496152/1‑100 (MQ=255)
                                                      caccGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCcggtg                                                   <  1:540035/101‑1 (MQ=255)
                                                      caccGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCcggtg                                                   <  2:2759986/101‑1 (MQ=255)
                                                      caccGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGAGGATCGAAACTGCACCCGCTGGCCCTGCcggtg                                                   >  1:3998650/1‑101 (MQ=255)
                                                       cccGGAGCAATTTCCCCCGTCTGGTCAGCGGGTTACGAACCGGCAGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCcggtga                                                  <  1:3883878/100‑1 (MQ=38)
                                                       accGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCcggtga                                                  >  2:1696756/1‑101 (MQ=255)
                                                        ccGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCcggtgat                                                 <  2:3918977/101‑1 (MQ=255)
                                                        ccGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCcggtgat                                                 <  1:98353/101‑1 (MQ=255)
                                                         cGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCcggtgatc                                                <  1:1524043/101‑1 (MQ=255)
                                                         cGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCcggcggtc                                                >  1:4051683/1‑96 (MQ=255)
                                                         cGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGCGGGCGTGGATCGAAACTCCACCCGCTGGCCCCGCcggtgaac                                                >  1:883350/1‑99 (MQ=255)
                                                          ggAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCcggtgatcg                                               >  2:2061357/1‑101 (MQ=255)
                                                          ggAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCcggtgatcg                                               >  2:2110342/1‑101 (MQ=255)
                                                          ggAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCcggtgatcg                                               >  2:661631/1‑101 (MQ=255)
                                                           gAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCcggtgatcgg                                              >  1:2350769/1‑101 (MQ=255)
                                                            aGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCcggtgatcggt                                             >  1:2986407/1‑101 (MQ=255)
                                                              cAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCcggcgatcggtg.a                                          >  1:3469367/1‑101 (MQ=255)
                                                               aaTTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCcggtgatcggtg.at                                         <  2:2024427/101‑1 (MQ=255)
                                                                 tttACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCCGGGGATCGGTG.ATCa                                       >  2:4031935/1‑101 (MQ=255)
                                                                    acacCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCCGGTGATCGGTG.ATCAGCg                                    >  2:1791397/1‑101 (MQ=255)
                                                                      cccGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCCGGTGATCGGTG.ATCAGCGGt                                  <  1:1106706/100‑1 (MQ=255)
                                                                      acCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCCGGTGATCGGTG.ATCAGCggc                                  >  2:3178039/1‑100 (MQ=255)
                                                                      acCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCCGGTGATCGGTG.ATCAGCGGt                                  >  2:3220691/1‑101 (MQ=255)
                                                                        cGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCCGGTGATCGGTG.ATCAGCGGTCg                                <  1:3351839/101‑1 (MQ=255)
                                                                         gTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCCGGTGATCGGTG.ATCAGCGGTCGc                               >  2:2300353/1‑101 (MQ=255)
                                                                          tCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCCGGTGATCGGTG.ATCAGCGGTCGCt                              >  2:4224089/1‑101 (MQ=255)
                                                                          tCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCCGGTGATCGGTG.ATCAGCGGTCGCt                              >  1:182349/1‑101 (MQ=255)
                                                                             ggTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCCGGTGATCGGTG.ATCAGCGGTCGCTccc                           >  2:3968839/1‑101 (MQ=255)
                                                                             ggTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCCGGTGATCGGTG.ATCAGCGGTCGCTccc                           >  1:1225161/1‑101 (MQ=255)
                                                                             ggTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCCGGGGATCGGTG.ATCAGCGGTCGGTccc                           >  2:3368734/1‑101 (MQ=255)
                                                                              gccAGGGGGTTACGAACCGGCAGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACTGCCCCCGCTGGCCCTGCCGGTGATCGGTG.ATCAGCGGTCGCTcccc                          <  2:3733926/99‑1 (MQ=38)
                                                                                 aGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTCACCCGCTGGCCCTGCCGGTGACCGGTG.ATCAGCGGTCGCGccccccc                       >  2:644228/1‑100 (MQ=37)
                                                                                   cGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCCGGTGATCGGTG.ATCAGCGGTCGCTCCCCCcgcg                     >  2:4319255/1‑101 (MQ=255)
                                                                                   cGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCCGGTGATCGGTG.ATCAGCGGTCGCTCCCCCcgcg                     <  2:3143124/101‑1 (MQ=255)
                                                                                      gTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCCGGTGATCGGTG.ATCAGCGGTCGCTCCCCCCGCgggg                  <  1:2338731/101‑1 (MQ=255)
                                                                                            tcaacactgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.GCTGGCGCGCGCCGCGCCG..GATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGAt          >  1:3692723/9‑101 (MQ=2)
                                                                                            tcaacactgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.GCTGGCGCGCGCCGCGCCG..GATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGAt          >  1:4524058/9‑101 (MQ=2)
                                                                                            tcaacactgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.GCTGGCGCGCGCCGCGCCG..GATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGAt          >  2:2494299/9‑101 (MQ=2)
                                                                                             caacactgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.GCTGGCGCGCGCCGCGCCG..GATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATc         <  1:3158007/94‑1 (MQ=2)
                                                                                             aaCGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCCGGTGATCGGTG.ATCAGCGGTCGCTCCCCCCGCGGGGGCGTGGa           >  1:4494640/1‑101 (MQ=255)
                                                                                               cGGCAGTCGCTCGCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCCGGTGATCGGTG.ATCAGCGGTCGCTCCCCCCGCGGGGGCGTGGATc         >  1:2531988/1‑101 (MQ=255)
                                                                                               cGGCAGTCCCGCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGTCCCTGCCGGTTATCGGGG.ATCAGCGGTCGCTCCCCCCGCGGGGGCGTGGATc         <  1:1035692/101‑1 (MQ=38)
                                                                                                ggCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCCGGTGATCGGTG.ATCAGCGGTCGCTCCCCCCGCGGGGGCGTGGATCg        >  1:2273341/1‑101 (MQ=255)
                                                                                                cactgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.GCTGGCGCGCGCCGCGCCG..GATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGaa      >  1:4390574/5‑101 (MQ=2)
                                                                                                cactgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.GCTGGCGCGCGCCGCGCCG..GATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGaa      >  1:4216720/5‑101 (MQ=2)
                                                                                                 gCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGAACCCGCTGGGCCTGCCGGTGATCGGTG.ATCAGCGGTCGCTCCACCCGCGGGGGCGTggcacga       >  1:1333637/1‑96 (MQ=37)
                                                                                                 gCAGTCCCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCCGGTGATCGGTG.ATCAGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGa       <  2:4574396/101‑1 (MQ=255)
                                                                                                 cctgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.GCTGGCGCGCGCCGCGCCG..GATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGaaa     <  1:1424812/98‑1 (MQ=2)
                                                                                                  cAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCCGGTGATCGGTG.ATCAGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGaa      <  2:3004297/101‑1 (MQ=255)
                                                                                                   tgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.GCTGGCGCGCGCCGCGCCG..GATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAct   >  2:1752721/2‑100 (MQ=2)
                                                                                                   aGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCCGGTGATCGGTG.ATCAGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGaaa     >  2:3251534/1‑101 (MQ=255)
                                                                                                   aGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCCGGTGATCGGTG.ATCAGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGaaa     >  1:2888290/1‑101 (MQ=255)
                                                                                                   aGTCGCGCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCCGGTGATCGGTG.ATCAGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGaaa     <  1:4633246/101‑1 (MQ=255)
                                                                                                    gTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.GCTGGCGCGCGCCGCGCCG..GATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAActc  >  1:3860529/1‑99 (MQ=2)
                                                                                                    |                                                                                                       
CCGGAGCACCTTGCGCTGCCGCTCCGGAGGCGCTTGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCACCCGCTGGCCCTGCCGGTGATCGGTG.ATCAGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAT  >  NC_014034/1395265‑1395467

Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG