New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1303942 =94 (0.510)12 (0.060) 3/156 32.6 0.09 intergenic (+129/+28) urtE/RCAP_rcc01231 urea ABC transporter ATP‑binding protein UrtE/UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
?NC_014034 = 1478624 145 (0.610)intergenic (+112/+31) RCAP_rcc01372/RCAP_rcc01373 ABC transporter ATP‑binding protein/RpiR family transcriptional regulator
Rejected: Position hash score below cutoff.

Only 100 of 119 total aligned reads displayed.

TGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCC....GCCAAGATGGGG..G..G.C.CCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAGCGCGCCGAGCGCC  >  NC_014034/1303858‑1304042
                                                                                              |                                                                                                     
tGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGgggcggg                                                                                             >  2:169142/1‑101 (MQ=14)
tGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGgggcggg                                                                                             <  1:2480518/101‑1 (MQ=14)
 ggggCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGgggcgggc                                                                                            <  2:1302747/101‑1 (MQ=14)
  gggCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCgggcc                                                                                           >  2:4068038/1‑101 (MQ=14)
      aaGATAACCCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCgggccgcag                                                                                       <  2:324371/101‑1 (MQ=9)
      aaGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCgggccgcag                                                                                       >  1:3519800/1‑101 (MQ=14)
      aaGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGGGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCgggccgcag                                                                                       >  1:3361931/1‑101 (MQ=9)
       aGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCgggccgcagg                                                                                      >  1:4163937/1‑101 (MQ=14)
       aGATAAACCCCATCCTTTCACCTTGCCGCAAATACCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCgggccgcagg                                                                                      <  2:2228843/101‑1 (MQ=9)
        gATAAACCCCATCCTTTCCCCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCgggccgcaggg                                                                                     <  1:696988/101‑1 (MQ=9)
        gATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCCG.CGCCCCCTTTT.CGGGGCgggccgccagg                                                                                     >  2:2901542/1‑97 (MQ=9)
         aTAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGGGAATTGGCCGAAGGCCAGGAGGGGG..GCAG.CGCCCCCTTTT.AGGGGCgggccgcagggc                                                                                    >  1:1387025/1‑101 (MQ=9)
          tAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCgggccgcagggcc                                                                                   <  2:3334533/101‑1 (MQ=14)
          tAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCgggccgcagggcc                                                                                   >  1:2445950/1‑101 (MQ=14)
           aagccctgtCCTTTCGCCTTGCCGCAAAGGTTCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCgggccgcagggccg                                                                                  <  1:2545422/93‑1 (MQ=2)
           aaaCCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCgggccgcagggccg                                                                                  >  2:235268/1‑101 (MQ=14)
           aaaCCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCgggccgcagggccg                                                                                  >  2:1990618/1‑101 (MQ=14)
            aaCCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCgggccgcagggccgc                                                                                 >  2:2594452/1‑101 (MQ=14)
              ccccATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCAc                                                                               <  2:211985/101‑1 (MQ=14)
              ccccATCCTTTCACCTTGCCGCAAATATCCCGGGGGGGGAATTGGCCGAAGGCCAAGAGGGGGTCA..G.CGCGCCCTTTT.CGGGGCGGGCCGCAGGGCCGCAc                                                                               >  2:2830202/1‑101 (MQ=9)
              ccccATCCTTTCACCTTGCCGCAAATATCCCGGGGGGGGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGGACCCTTTT.CGGGGCGGGCCGCAGGGCCGCAc                                                                               >  1:3428062/1‑101 (MQ=9)
                ccATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCAccc                                                                             >  2:468793/1‑101 (MQ=14)
                 cATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCt                                                                            <  1:681799/101‑1 (MQ=14)
                  ctCCTTTCTCGTTGCGGTATATATCCTGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGT..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCCCCCTg                                                                           <  2:4553359/100‑1 (MQ=2)
                    ccTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTc                                                                         >  1:244201/1‑101 (MQ=14)
                     cTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCa                                                                        <  2:3417652/101‑1 (MQ=14)
                     cTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCa                                                                        >  2:3139949/1‑101 (MQ=14)
                      tttCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAg                                                                       <  2:3606259/101‑1 (MQ=14)
                      tttCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAg                                                                       >  1:1922202/1‑101 (MQ=14)
                        tccccTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAgcg                                                                     <  1:2659521/98‑1 (MQ=9)
                        tCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAgcg                                                                     <  1:672721/101‑1 (MQ=14)
                        tCACCTAGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGGCGCAGGGCCGCACCCGGTCAgcg                                                                     >  2:1984083/1‑101 (MQ=9)
                         cACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAgcgc                                                                    >  2:2595452/1‑101 (MQ=17)
                         cACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAgcgc                                                                    >  1:4546583/1‑101 (MQ=17)
                          aCCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGGCGCAGGGCCGGACCCTGTAAgggcc                                                                   >  2:1834988/1‑100 (MQ=2)
                           ccTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCAt                                                                  <  1:2833865/101‑1 (MQ=17)
                           ccTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCAt                                                                  <  1:1950939/101‑1 (MQ=17)
                           ccTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCAt                                                                  <  2:2129937/101‑1 (MQ=17)
                            cTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGACAAGAGGGGG..GCAGAG.CCCCCTTTT.CGGGGCGGGGCGCCGGGCCGCCCCCCGTCAGCGCATc                                                                 >  1:1346634/1‑101 (MQ=2)
                             ttGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCACCCTTTT.CGGGGCGGGCCACAGGGCCGCACCCTGTCAGCGCATcc                                                                >  1:3921635/1‑101 (MQ=9)
                             ttGCCGCAAATATCCCGGGGGGCGAATTGGCCGAAGGCCAAGAGGGGG..GGAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATcc                                                                >  2:3620349/1‑101 (MQ=12)
                               gCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATcccc                                                              <  2:3552468/101‑1 (MQ=17)
                                ccGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCa                                                             >  2:2137204/1‑101 (MQ=17)
                                 cGCAAATATCCGGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCaa                                                            <  1:240545/101‑1 (MQ=12)
                                 cGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCaa                                                            <  2:2367764/101‑1 (MQ=17)
                                 cGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCaa                                                            <  1:2070820/101‑1 (MQ=17)
                                 cGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCaa                                                            >  2:1536373/1‑101 (MQ=17)
                                 cGCAAATATCCCGGGGGGGGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGCACGCAGGGCCGCACCCCGTAAGGGCATCCCCaa                                                            >  2:2675182/1‑101 (MQ=2)
                                  gCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCCTCCCCAAg                                                           >  2:2919270/1‑101 (MQ=12)
                                  gCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAg                                                           <  1:3847456/101‑1 (MQ=17)
                                  gCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAg                                                           >  2:4312132/1‑101 (MQ=17)
                                   cAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgc                                                          >  1:611256/1‑101 (MQ=17)
                                   cAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgc                                                          <  1:2563645/101‑1 (MQ=17)
                                   cAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgc                                                          >  1:2142319/1‑101 (MQ=17)
                                   cAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgc                                                          >  2:3592606/1‑101 (MQ=17)
                                    aaaTATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgcc                                                         >  1:2088477/1‑101 (MQ=17)
                                    aaaTATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgcc                                                         >  1:4562583/1‑101 (MQ=17)
                                     aaTATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCACgccc                                                        >  2:388819/1‑101 (MQ=12)
                                     aaTATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgccc                                                        >  2:1184657/1‑101 (MQ=17)
                                      atatCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgcccg                                                       <  2:1726875/101‑1 (MQ=17)
                                      atatCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgcccg                                                       >  1:3954970/1‑101 (MQ=17)
                                        atCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgcccgcc                                                     >  1:55191/1‑101 (MQ=18)
                                        atCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgcccgcc                                                     >  1:2169724/1‑101 (MQ=18)
                                        atCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgcccgcc                                                     >  2:2463653/1‑101 (MQ=18)
                                         tCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgcccgccc                                                    <  1:1331944/101‑1 (MQ=18)
                                         tCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgcccgccc                                                    <  2:2789066/101‑1 (MQ=18)
                                         tCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCAGCCCCAAggccgccc                                                    >  1:662158/1‑101 (MQ=12)
                                         tCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGCCCGCACCCTGTCAGCGCATCCCCAAgcccgccc                                                    >  1:3979998/1‑101 (MQ=12)
                                           ccGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCccgcccgc                                                  >  1:3638509/1‑101 (MQ=18)
                                            cGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCa                                                 >  2:4137729/1‑101 (MQ=18)
                                            cGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCa                                                 >  2:2702082/1‑101 (MQ=18)
                                            cGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCa                                                 >  1:710613/1‑101 (MQ=18)
                                            cGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCa                                                 <  1:1369859/101‑1 (MQ=18)
                                            cGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG..GCAG.CGCCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCa                                                 <  1:1330941/101‑1 (MQ=18)
                                                                             ggggcagcgcccccTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCAt                   <  1:3164831/92‑1 (MQ=255)
                                                                              gggcagcgcccccTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATa                  <  1:2966969/93‑1 (MQ=255)
                                                                               ggcagcgccccgTTTT.CGGGGGGGGCCGCAGGGCCGCACCCTGGCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGGTTGAACGCATaa                 <  2:1084236/94‑1 (MQ=255)
                                                                               ggcagcgcccccTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATaa                 <  2:363532/94‑1 (MQ=255)
                                                                               gcggcc.cccctTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATaaa                <  2:625120/96‑1 (MQ=255)
                                                                               gccgcc.cccccTTTTGCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATaa                 <  2:1268123/96‑1 (MQ=255)
                                                                               gccccc.cccctTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATaaa                <  2:4562284/96‑1 (MQ=255)
                                                                                gcagcgcccccTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATaaa                <  2:3002466/95‑1 (MQ=255)
                                                                                 cagcgcgcccTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTCCGCATCGGCGTTGACGCATaaac               >  2:3114495/8‑100 (MQ=255)
                                                                                  agcgcccccTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAgc              >  2:2551189/5‑101 (MQ=255)
                                                                                  agcgcccccTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAgc              >  1:3588944/5‑101 (MQ=255)
                                                                                   gcgcccccTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAgcg             >  1:3686316/4‑101 (MQ=255)
                                                                                    cgcccccTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCCTAAAgcgc            >  2:2203147/3‑101 (MQ=255)
                                                                                    cgcccccTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAgcgc            >  1:4547370/3‑101 (MQ=255)
                                                                                    cgcccccTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAgcgc            <  2:1373047/99‑1 (MQ=255)
                                                                                      cccccTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAgcgcgc          <  1:2860446/101‑1 (MQ=255)
                                                                                      cccccTTTC.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAgcgcgc          <  2:1659141/101‑1 (MQ=255)
                                                                                       tgttttgt.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAGCGCGcc         <  1:235292/94‑1 (MQ=255)
                                                                                         tatttt.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAGCGCGCCGa       <  1:3140193/99‑1 (MQ=255)
                                                                                         cttttt.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAGCGCGCCGa       <  2:3257825/99‑1 (MQ=255)
                                                                                         ccTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAGCGCGCCGa       >  1:587105/1‑101 (MQ=255)
                                                                                          cTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAGCGCGCCGAg      >  1:3738027/1‑101 (MQ=255)
                                                                                          cTTTT.CGGCTTGTGCCGCAGGGCCGCAACCTGTCAGCGCATCCCCAAGCCCGGCCGCATCAGCGTCTTGCGCACCGGCTTGAACGCATAAAGCGCGCCGAg      <  2:1914574/101‑1 (MQ=255)
                                                                                            ttt.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAGCGCGCCGAgcg    >  1:3796326/1‑101 (MQ=255)
                                                                                             tt.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAGCGCGCCGAgcgc   >  2:3909968/1‑101 (MQ=255)
                                                                                             tt.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAGCGCGCCGAgcgc   >  2:4587644/1‑101 (MQ=255)
                                                                                              |                                                                                                     
TGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCC....GCCAAGATGGGG..G..G.C.CCCCCTTTT.CGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAGCGCGCCGAGCGCC  >  NC_014034/1303858‑1304042

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 32 ≤  ATCG  < 39 ≤  ATCG