New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 392468	31 (0.180)	5 (0.030)	2/146	32.6	0.12	intergenic (‑116/+27)	RCAP_rcc00363/trmD	hypothetical protein/tRNA (guanine‑N1)‑methyltransferase
	?	NC_014034	1699965 =	44 (0.190)					intergenic (+38/+5)	RCAP_rcc01568/purF	RES domain family protein/amidophosphoribosyltransferase
Rejected: Position hash score below cutoff.

GTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCCC.GGCGGGTCGCCTCGGCG.CAGCCGAGGCGAAATCA.CTTGCCGAACTTCT.CCCACAAATCCGG.CCG.CCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATT  >  NC_014034/392368‑392568                                                                                                       |                                                                                                          gTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCCc.ggcgg                                                                                                           >  2:3726055/1‑101 (MQ=255)  tCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCCC.GGCggg                                                                                                          >  2:2232111/1‑101 (MQ=255)   cACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCCC.GGCgggg                                                                                                         >  2:1271841/1‑100 (MQ=255)    aCCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCCC.GGCggggg                                                                                                        >  1:308611/1‑99 (MQ=255)     ccGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCCC.GGCgggggg                                                                                                       >  1:1213021/1‑98 (MQ=255)           aaGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCCC.GGCgggggggcggtg                                                                                                 >  2:85766/1‑92 (MQ=255)                     ggCCCAAACCGGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCCC.GGCGGGGCGGCCCGGGG.CCGccccg                                                                                      >  1:2819665/1‑98 (MQ=21)                          aaaCCGGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCCC.GGCGGGGGGCCCCGGCG.GCGCCGCGGCgga                                                                                 >  2:4451234/1‑99 (MQ=18)                                   ggaacagggCCGGCCCTTTCCTTTTTCCCAAAACTTCCCGGGGGGCGGGGGGGGGGCCCCCCC.GGCGGGTCGCCTCGGCG.CAGCCGAGGCGAAATCA.CTTg                                                                        <  2:2648149/94‑1 (MQ=9)                                        aTGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCCC.GGCGGGGGGCCCCCGCG.CCGGCGAGGGGGAAACA.catacccaaa                                                                  >  2:3105023/1‑92 (MQ=14)                                                 cATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCCC.GGCGGGGGGCCTCGGCG.CCGCCCAGGCGGAAAAA.CATTCCCGACTTCT.ccccc                                                        >  2:2872107/1‑99 (MQ=17)                                                              cTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCCC.GGCGGGGGGGCTCGGCG.CCGCCGGGGGGGAAAAA.CTTTCCGCACCTCT.CCCCCCCACCCCg.ccg.cc                                         >  2:3434921/1‑101 (MQ=9)                                                               tCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCCC.GGCGGGGGGCCCCGGCG.GGGGCGCGGCGGAAACACCTTCCCGACCTTTC.CCCCCAAACCCGc.ccc.cc                                         >  1:3489145/1‑101 (MQ=2)                                                                   atatCCCGGGGGTC.CGGGGGCGGAGCCCCC.GGCGGGGGGGCCCGGCG.CGGCCGCGGGGGAAACA.CTTTCCCAACCTCT.CCCCCCAAACCCG.CCC.CCGGCcc                                    >  1:514642/1‑101 (MQ=9)                                                                    atccccGGGGGGC.CGGGGGGGGGCCCCCCGGGCGGGTCGCCTCGGCG.CAGCCGAGGCGAAATCA.CTTGCCGAACTTCT.CCCACAAATCCGG.CCG.CCGGTcc                                    <  1:2013339/98‑1 (MQ=37)                                                                    acccgggggggCC.GGGGGGCGGGCCCCCCGGGCGGGTCGCCTCGGCG.CAGCCGAGGCGAAATCA.CTTGCCGAACTTCT.CCCACAAATCCGG.CCG.CCGGTcc                                    <  1:2004951/95‑1 (MQ=25)                                                                       cgggggggGC.GGGGGGGGGGCCCCCC.GGCGGGGCGCCGCGGCG.CACCCGAGGCGAAATCC.CTTGCCGAACTTCT.CCCACAAATCCGG.CCG.CCGGTCCcgcg                                <  1:656657/98‑1 (MQ=255)                                                                          tctggTC.CGGGGGCGGAGCCCCC.GGCGGGTCGCCTCGGCG.CAGCCGAGGCGAAATCA.CTTGCCGAACTTCT.CCCACAAATCCGG.CCG.CCGGTCCCGCGTCa                             <  2:2196329/98‑1 (MQ=255)                                                                          gggggTC.CGGGGGCGGAGCCCCC.GGCGGGGCGCCCCCGCG.CCGCCCGGGGGGAAACA.CTTGCCGAACCTCTCCCCCCAAACCCGC.CCC.CCGGCcccccccc                              >  1:3024107/1‑96 (MQ=9)                                                                           gcgggggcGGGGGCGGCCCGCCG.GGCGGGTCGCCTCGGCG.CAGCCGAGGCGAAATCA.CTTGCCGAACTCCT.CCCACAAATCCGG.CCG.CCGGTCCCGCGTCa                             <  1:4364068/94‑1 (MQ=25)                                                                            gggTC.CGGGGGCGGAGCCCCC.GGCGGGGGGGCCCGGGG.CGGCCCCGGGGGGAACA.CCTTCCGGACCTCT.CCCCCACAACCGG.CCC.CCGGCGCcgccgccca                           >  1:4631728/1‑95 (MQ=2)                                                                            gggTC.CGGGGGCGGAGCCCCC.GGCGGGGGGCCCCGGCG.CCGCCGGGGGGGAAAAA.CTTGCCGCACTTCT.CCCCCAAAACCCG.CCG.CCCGGCCCGCGCCaaa                           >  2:3098596/1‑101 (MQ=16)                                                                             ggTC.CGGGGGCGGAGCCCCC.GGCGGGGTGGCCCGGGG.CACGCGCGGCGCAAACA.ATTGCCCACCCGCT.CCCCCCAATACCG.CCG.CCGGTCCCCCGCCCAAg                          >  1:4446381/1‑101 (MQ=2)                                                                             ggTC.CGGGGGCGGAGCCCCC.GGCGGGGGGCCCCGGGG.CCGCCCCGGGGGAAACA.CCTGCCCAACTTCT.CCCCCCAAACCCG.CCG.CCCGGccccccgccaca                          >  1:2196479/1‑92 (MQ=9)                                                                               tC.CGGGGGCGGAGCCCCC.GGCGGGGGGGCCCGGCGCCGGCCGGGGGGAAACAA.CTT.CCGCACTTCT.CCCCCCAAACCGC.CCG.CCCGGCCcgccgccaaacc                        >  2:3357613/1‑92 (MQ=255)                                                                                c.cGGGGGCGGAGCCCCC.GGCGGGGGGCCCCCGCG.CCGCCCCGGCGGAAACA.CCTGCCGAAACTCT.CCCCCAAAACCCG.CCGCCCGGTCCC.CGCCAAAggct                       >  2:3086984/1‑98 (MQ=255)                                                                                   gggggCGGAGCCCCC.GGCGGGGCGCCTCCGCG.CGGCCCCGGGGGAAACA.CTTTCCGCACTTCT.CCCCCCAAACCGGCCCC.CCGGCCCCCCGCCAAAGCTTc                      >  2:2791014/1‑101 (MQ=255)                                                                                    ggggGGGCGCCCCCGGGCGGGTCGCCTCGGCG.CAGCCGAGGCGAAATCA.CTTGCCGAACTTCT.CCCACAAATCCGG.CCG.CCGGTCCCGCGTCAAAGCTTCg                     <  2:4622736/101‑1 (MQ=37)                                                                                      ggCGGAGCCCCC.GGCGGGAAGCCTCCGCG.CAGCCCAGGCCAAATAA.CTTGCCGAGCCTCT.CCCCCACATCCGG.ACG.CCGGGCCCCCGGCACAGCTGCGctc                  >  2:3408885/1‑101 (MQ=255)                                                                                        cGGAGCCCCC.GGCGGGGGGCCCCCGGG.CCGCCGGGGGGGAAAAA.ATTGCCGAAATTTT.CCCACCAAACCCG.CCC.CCCGTCCCCCGCCAAAGACTCGcgcct                >  2:3678130/1‑97 (MQ=255)                                                                                               cggggccggGTCGCCTCGGCG.CAGCCGAGGCGAAATCC.CTTGCCGAACTTCT.CCCACAAATCCGG.CCG.CCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTcg          <  1:85780/95‑1 (MQ=255)                                                                                                cc.GGCGGGTCGCCTCGGCG.CAGCCGAGGCGAAATCA.CTTGCCGAACTTCT.CCCACAAATCCGG.CCG.CCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTcgcc        <  2:1419788/101‑1 (MQ=255)                                                                                                 cgggcggGTCGCCTCGGCG.CAGCCGAGGCGAAATCA.CTTGCCGAACTTCT.CCCACAAATCCGG.CCG.CCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTcgcc        <  1:4160217/99‑1 (MQ=255)                                                                                                    gcggGTCGCCTCGGCG.CAGCCGAGGCGAAATCA.CTTGCCGAACTTCT.CCCACAAATCCGG.CCG.CCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCgccgcc     >  1:2908911/1‑101 (MQ=255)                                                                                                     cggGTCGCCTCGGCG.CAGCCGAGGCGAAATCA.CTTGCCGAACTTCT.CCCACAAATCCGG.CCG.CCGGTCCCGCGTCAAAGCTTCGCTCTGCCCTCGCCGCCa    >  1:917461/1‑101 (MQ=255)                                                                                                      gggTCGCCTCGGCG.CAGCCGAGGCGAAATCA.CTTGCCGAACTTCT.CCCACAAATCCGG.CCG.CCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCAt   <  1:501536/101‑1 (MQ=255)                                                                                                       ggTCGCCTCGGCG.CAGCCGAGGCGAAATCA.CTTGCCGAACTTCT.CCCACAAATCCGG.CCG.CCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCAtt  >  2:1766224/1‑101 (MQ=255)                                                                                                       ggTCGCCTCGGCG.CAGCCGAGGCGAAATCA.CTTGCCGAACTTCT.CCCACAAATCCGG.CCG.CCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCAtt  >  1:3823643/1‑101 (MQ=255)                                                                                                       ggTCCCCTGGGCG.CAGCCGAGGCGAAATCA.CTTGCCGACCTTCT.CCCAAAAATCCGG.CCG.CCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCAtt  <  2:2321843/101‑1 (MQ=255)                                                                                                       |                                                                                                          GTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCCC.GGCGGGTCGCCTCGGCG.CAGCCGAGGCGAAATCA.CTTGCCGAACTTCT.CCCACAAATCCGG.CCG.CCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATT  >  NC_014034/392368‑392568 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG