New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 698424 =27 (0.120)2 (0.010) 2/182 36.9 0.02 coding (1664/1773 nt) RCAP_rcc00640 S1/S6 family peptidase
?NC_014034 2092943 = 168 (0.710)coding (700/1401 nt) manB phosphomannomutase
Rejected: Position hash score below cutoff.

GGCGGGGGCGGGGGCCGGGGCGGGGGTCGGGGCGGGCGTCGCCGAAGCGGGCGCCACCGTCGGTTGGCAGCTGGCGCGGTCCGGCGTCAC.GGCGGCGGGGGTTCCGG.CCAGAAACTCGGCCAGACCCGCGGCCGA  >  NC_014034/698390‑698524
                                  |                                                                                                      
ggcgggggcgggGGCCGGGGCGGGGGTCGGGGCGGGCGTCGCCGAAGCGGGCGCCACCGTCGGTTGGCAGCTGGCGCGGTCCGGCGTCAC.GGCGGCggggg                                     >  2:4597816/1‑101 (MQ=255)
      ggcgggggcCGGGGCGGGGGTCGGGGCGGGCGTCGCCGAAGCGGGCGCCACCGTCGGTTGGCAGCTGGCGCGGTCCGGCGTCAC.GGCGGCGGGGGGTCCgg                               >  2:1168455/1‑101 (MQ=255)
         gggggcCGGGGCGGGGGTCGGGGCGGGGGTCGCCGAAGCGGGCGCCACCGTCGGTTGGCAGCTGGCGCGGTCCGGCGTCAC.GGGGGCGGGGGGTCCAG.caa                           >  2:4653734/1‑99 (MQ=255)
         gggggcCGGGGCGGGGGTCGGGGCGGGCGTCGCCGAAGCGGGCGCCACCGTCGGTTGGCAGCTGGCGCGGTCCGGCGTCAC.GGCGGCGGGGGTTCCGG.CCa                           >  2:4520964/1‑101 (MQ=255)
         gggggcCGGGGCGGGGGTCGGGGCGGGCGTCGCCGAAGCGGGCGCCACCGTCGGTTGGCAGCTGGCGCGGTCCGGCGTCAC.GGCGGCGGGGGGTCCGG.CCa                           >  2:3743160/1‑101 (MQ=255)
         gggggcCGGGGCGGGGGTCGGGGCGGGCGTCGCCGAAGCGGGCGCCACCGTCGGTTGGCAGCTGGCGCGGTCCGGCGTCAC.GGCGGCGGGGGGTCCGG.CCa                           >  2:1584521/1‑101 (MQ=255)
         gggggcCGGGGAGGGGGTCGGGGCGGGCGTCGCCGAAGGGGGCGCCACCGTCGGTTGGCAGCTGGCGCGGACCGGCGTCAC.GGCGGCgggggagtccggca                            >  2:693115/1‑92 (MQ=255)
           gggcCGGGGCGGGGGTCGGGGCGGGCGTCGCCGAAGCGGGCGCCACCGTCGGTTGGCCGCTGGCGCGGTCCGGCGTCAC.GGCGGCGGGGGGTCCGG.CCCGa                         >  1:2063436/1‑101 (MQ=255)
           gggcCGGGGCGGGGGTCGGGGCGGGCGTCGCCGAAGCGGGCGCCACCGTCGGTTGGCAGCTGGCGCGGTCCGGCGTCAC.GGCGGCGGGGGGTCCGG.CCCGa                         >  2:21273/1‑101 (MQ=255)
              ccGGGGCGGGGGTCGGGGCGGGCGTCGCCGAAGCGGGCGCCACCGTCGGTTGGCAGCTGGCGCGGTCCGGGGGATC.GGCGGCGGGGGGGCCGG.CCCGCAAc                      >  1:550278/1‑101 (MQ=37)
               cggggcggggGTCGGGGCGGGCGTCGCCGAAGCGGGAGCCACCGTCGGTTGGCAAATGGAGCGGTCCGGGGTCAC.GGCGGGGGGGGGGCCgggaaaaaaca                      >  2:1645893/1‑92 (MQ=255)
                ggggcggggGTCGGGGCGGGCGTCGCCGAAGCGGGCGCCACCGTCGGTTGGCAGCTGGCGCGGTCCGGCGTCAC.GGCGGCGGGGGGTCCGG.cccggaaacc                    >  2:3642907/1‑93 (MQ=255)
                  ggcggggGCCGGGGCGGGCGTCGCCGAAGCGGGCGCCACCGTCGGTTGGCAGCTGGCGCGGCCCGGCGTCACGGGCGGC.GAGGTTTCGG.GCAGaaaaacgg                  >  2:1114376/1‑96 (MQ=25)
                   gcggggGTCGGGGCGGGCGTCGCCGAAGCGGGCGCCACCGTCGGTTGGCAGCTGGCGCGGTCCGGCGTCAC.GGCGGCGGGGGGTCCGG.CCCGAAACTCGGc                 >  1:2948423/1‑101 (MQ=255)
                   gcggggGTCGGGGCGGGCGTCGCCGAAGCGGGCGCCACCGTCGGTTGGCAGCTGGCGCGGTCCGGCGTCAC.GGCGGCGGGGGGTCCGG.CCAGAAACTCCGc                 >  2:3512696/1‑101 (MQ=255)
                    cggggGTCGGGGCGGGCGTCGCCGAAGCGGGCGCCACCGTCGGTTGGCAGCTGGCGCGGTCCGGCGTCAC.GGCGGCGGGGGGTCCGG.CCAAAAACTCGGcc                >  2:2722052/1‑101 (MQ=255)
                     gggggTCGGGGCGGGCGTCGCCGAAGCGGGCGCCACCGTCGGTTGGCAGCTGGCGCGGTCCGGCGTCAC.GGCGGCGGGGGGTGCCG.GCAGAAACTCGGCCa               >  1:1868466/1‑101 (MQ=39)
                       gggTCGGGGCGGGCGTCGCCGAAGCGGGCGCCACCGTCGGTTGGCAGCTGGCGCGGTCCGGCGTCAC.GGCGGCGGGGGGTCCGG.CCAGAAACTCGGCCCGa             >  1:363133/1‑101 (MQ=255)
                         gTCGGGGCGGGCGTCGCCGAAGCGGGCGCCACCGCCGGTTGGCAGCTGGCGCGGTCCGGCGGCCA.GGCGGCCGGGGGTCCGGCCCGGAAACTCGCccgagc            >  1:2521159/1‑97 (MQ=255)
                           cGGGGCGGGCGTCGCCGAAGCGGGCGCCACCGTCGGTTGGCCGCTGGAGCGGTCCGGCGTCAC.GGCGGCGGGGGTTCCAG.CCAGGAACCCGGCCAGAACcg         >  2:781885/1‑101 (MQ=38)
                            ggggCGGGCGTCGCCGAAGCGGGCGCCACCGTCGGTTGGCAGCTGGCGCGGTCCGGCGTCAC.GGCGGCGGGGGGTCCGG.CCAGAAACTCGGCCAGGccccc        >  1:4207477/1‑99 (MQ=255)
                            ggggCGGGCGTCGCCGAAGCGGGCGCCACCGTCGGTTGGCAGCTGGCGCGGTCCGGCGTCAC.GGCGGCGGGGGGTCCGG.CCAGAAACTCGGCCAGACCcgc        >  1:4118528/1‑101 (MQ=255)
                            ggggCGGGCGTCGCCGAAGCGGGCGCCACCGTCGGTTGGCAGCTGGCGCGGTCCGGCGTCAC.GGCGGCGGGGGGTCCGG.CCAGAAAATCGGGCCGAccccc        >  2:3176550/1‑99 (MQ=39)
                            ggggCGGGCGTCGCCGAAGCGGGCGCCACCGTCGGTTGGCAGCTGGCGCGGGCCGGCGTCAC.GGCGGCGGGGGGTCGGG.CCAGCAAATTGGCCGGAccccg        >  2:1172587/1‑99 (MQ=37)
                            ggggCGGGCGTCGCCGAAGCGGGCGCCACCGTCGGTTGGAAGCTGGCGCGGTCCGGCGTCAC.GGCGGCGGGGGTTTCTG.CCAGAAACTCGGGCAAACCcgc        >  1:1464777/1‑101 (MQ=38)
                               gcgggcgTCGCCGAAGCGGGCGCCACCGTCGGTTGGCAGCTGGCGCGGGCCGGCGTCAC.GGCGGCGGGGGTTCCGG.CCAGAAACTCGGCCACACCCCCggg     >  2:1401492/1‑100 (MQ=255)
                                 gggcgTCGCCGAAGCGGGCGCCACCGTCGGTTGGCAGCTGGCGCGGTCCGGCGTCAC.GGCGGCGGGGGTTCCGG.CCAGAAACTCGGCCAGCCCCCCGGCCg   >  2:511419/1‑101 (MQ=255)
                                  ggcgTCGCCGAAGCGGGCGCCACCGTCGGTTGGCAGCTGGCGCGGTCCGGCGTCAC.GGCGGCGGGGGGTCCGG.CCAGAAACTCGGCCAGACCCGAGGCCGa  >  1:769138/1‑101 (MQ=255)
                                  |                                                                                                      
GGCGGGGGCGGGGGCCGGGGCGGGGGTCGGGGCGGGCGTCGCCGAAGCGGGCGCCACCGTCGGTTGGCAGCTGGCGCGGTCCGGCGTCAC.GGCGGCGGGGGTTCCGG.CCAGAAACTCGGCCAGACCCGCGGCCGA  >  NC_014034/698390‑698524

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 18 ≤  ATCG  < 26 ≤  ATCG  < 37 ≤  ATCG