New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	158228 =	55 (0.240)	40 (0.170)	26/194	20.7	0.48	intergenic (+31/‑199)	parC/tuf1	DNA topoisomerase IV subunit A/translation elongation factor Tu
	?	NC_014034	= 2330172	31 (0.130)					intergenic (+147/+165)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

TGGGCAAGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAG  >  NC_014034/158130‑158324                                                                                                   |                                                                                                 tGGGCAAGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCcgcg                                                                                                <  1:1900087/101‑1 (MQ=255)    gCAAGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCgggg                                                                                             <  1:3247032/101‑1 (MQ=255)    gCAAGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCgggg                                                                                             <  1:2230775/101‑1 (MQ=255)     cAAGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCcgggc                                                                                            >  2:3033388/1‑100 (MQ=255)      aaGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCcgccgcggg                                                                                           >  1:2258199/1‑95 (MQ=255)      aaGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGc                                                                                           <  2:1362372/101‑1 (MQ=255)      aaGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCCCgggggg                                                                                           >  1:2304141/1‑100 (MQ=255)       aGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCcggccgg                                                                                          >  2:672012/1‑97 (MQ=255)       aGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCt                                                                                          <  2:833329/101‑1 (MQ=255)         cGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTcc                                                                                        <  1:3154870/101‑1 (MQ=255)           ggCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGc                                                                                      <  1:4309948/101‑1 (MQ=255)             cGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGccc                                                                                    <  2:4362751/101‑1 (MQ=255)              gAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGcccc                                                                                   <  1:2450127/101‑1 (MQ=255)               aGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGccccc                                                                                  <  2:4664806/101‑1 (MQ=255)               aGCGCCGGGCGGAGGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGccccc                                                                                  <  2:3274741/101‑1 (MQ=255)                gcgcCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCg                                                                                 <  2:2485604/101‑1 (MQ=255)                   ccGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCAc                                                                              <  2:4197749/101‑1 (MQ=255)                      ggCGGATGGCGCCGCGGGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCCCGGGGGCTCCGCCCCCGCAcccc                                                                           <  1:2851723/101‑1 (MQ=255)                       gCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCAccccc                                                                          <  2:3247259/101‑1 (MQ=255)                       gCGGATGGCGCCGCGCGGTTTCCCGCGCAAGACCCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCAccccc                                                                          <  1:120491/101‑1 (MQ=255)                         ggATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCgg                                                                        <  1:1700025/101‑1 (MQ=255)                           aTGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCg                                                                      <  1:893014/101‑1 (MQ=255)                             ggCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTa                                                                    <  2:660108/101‑1 (MQ=255)                                gccgcGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTAttt                                                                 <  1:2949860/101‑1 (MQ=255)                                gccgcGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTAttt                                                                 <  1:1281937/101‑1 (MQ=255)                                      cgGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCaa                                                           <  1:1128108/101‑1 (MQ=255)                                      cgGTTGCCCGCGCGACAACCGGGTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCaa                                                           <  2:799993/101‑1 (MQ=255)                                       ggTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAg                                                          <  1:293362/101‑1 (MQ=255)                                           tCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGaaa                                                      <  1:3903266/101‑1 (MQ=255)                                           tCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGaaa                                                      <  1:1619007/101‑1 (MQ=255)                                            cccGCGCGACAACCGGGTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGaaaa                                                     <  2:1169000/101‑1 (MQ=255)                                                  cgACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAgg                                               <  2:3027095/101‑1 (MQ=255)                                                     cAACCGGTTCCCCTGACGGGGTNTCGNGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGc                                            <  1:4163224/101‑1 (MQ=255)                                                      aaCCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGca                                           <  2:4657794/101‑2 (MQ=255)                                                       aCCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGccc                                          <  1:550975/101‑1 (MQ=255)                                                       aCCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGccc                                          <  1:1840385/101‑1 (MQ=255)                                                           gTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCg                                      <  2:2094862/101‑1 (MQ=255)                                                            ttCCCCTGACGGGGTTTCGGGCTGTGCCGCGACCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCgg                                     <  1:4146215/101‑1 (MQ=255)                                                              ccccTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGAc                                   <  2:983427/101‑1 (MQ=255)                                                                 cTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACgtg                                <  1:3306497/101‑1 (MQ=255)                                                                 cTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACgtg                                <  2:4212519/101‑1 (MQ=255)                                                                   gACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTc                              <  2:4564513/101‑1 (MQ=255)                                                                   gACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTc                              <  1:590811/101‑1 (MQ=255)                                                                    gcGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCg                             <  1:2048120/100‑1 (MQ=255)                                                                    gcGGGGGTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCg                             <  2:3687782/100‑1 (MQ=255)                                                                       gggTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGttt                          <  1:3607299/101‑1 (MQ=255)                                                                         gTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCg                        <  2:2021784/101‑1 (MQ=255)                                                                             cGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGa                    <  2:1597340/101‑1 (MQ=255)                                                                              gggCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGAc                   <  2:4400186/101‑1 (MQ=255)                                                                                     gCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCt            <  2:1146514/101‑1 (MQ=255)                                                                                        gcgcCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGcc         <  1:2057366/101‑1 (MQ=255)                                                                                        gcgcCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGcc         <  2:181649/101‑1 (MQ=255)                                                                                          gcCCGGCCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCt       <  1:630731/101‑1 (MQ=255)                                                                                          gcCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCt       <  1:1983597/101‑1 (MQ=255)                                                                                           cccGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTg      <  1:2666837/101‑1 (MQ=255)                                                                                            ccGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGATGTGTCGTTTCGGGGACGCGCGCTGCCCTgg     <  1:4148353/101‑1 (MQ=255)                                                                                               gcccGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAg  <  2:103294/100‑1 (MQ=255)                                                                                                   |                                                                                                 TGGGCAAGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAG  >  NC_014034/158130‑158324 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG