New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 163999884 (0.440)96 (0.510) 20/160 20.0 0.70 intergenic (+78/‑67) mccB/mccA methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha
?NC_014034 = 2600949 0 (0.000)intergenic (+11/‑130) RCAP_rcc02424/surE short‑chain dehydrogenase/reductase family oxidoreductase/5'‑nucleotidase SurE
Rejected: Position hash score below cutoff.

Only 100 of 113 total aligned reads displayed.

GCTTCGGGATCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTT.GGGGC.AAGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGG.....G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCC  >  NC_014034/1639898‑1640088
                                                                                                          |                                                                                                                 
gCTTCGGGATCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTT.GGGGC.AAGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.Cgggggg                                                                                                                   <  1:1746923/101‑1 (MQ=255)
  ttCGGGATCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTT.GGGGC.AAGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGcc                                                                                                                 <  2:945326/101‑1 (MQ=255)
   tCGGGATCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTT.GGGGC.AAGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGcc.c                                                                                                               <  2:1840928/101‑1 (MQ=255)
    cGGGATCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTT.GGGGC.AAGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..g                                                                                                            <  1:1030270/101‑1 (MQ=255)
     gggATCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGGTATTTGGGGGG.AAAATGAAACCCTCCCCTTT.CTCC.TTCCCCC.CATAACCC.CCGGGGGccgg                                                                                                               >  1:4610275/1‑99 (MQ=255)
     gggATCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGGGATTT.TGGGG.AAGATGAAAACCATCCCTTT.TCTC.TTTCCCC.CAAAATCC.CCGGGGGcc.ccg                                                                                                             >  1:4354726/1‑99 (MQ=255)
       gATCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGGGATTT.TGGGC.CAAAAGAAAACCCCCCCCTT.CATC.TTGCCCC.CAAAATCC.CCCGGGGGC.C..gggg                                                                                                         >  1:3276442/1‑101 (MQ=255)
       gATCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTT.GGGGC.AAGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..gggg                                                                                                         <  1:275683/101‑1 (MQ=255)
       gATCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTT.GGGGC.AAGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..gggg                                                                                                         <  1:3033990/101‑1 (MQ=255)
       gATCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGAAATTT.GGGGC.AAGATGAAAACCATCCCCTT.CATCTTTCCCCC.AAAAATCC.CGGGGGGccgcgg                                                                                                             >  1:775049/1‑97 (MQ=37)
         tCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGGGATTT.TGGGC.AAAAGAAAAAACACACCTTT.TATC.TTTCCCC.CAATATCC.CCGGGTGCC.C..gggg.....gg                                                                                                  >  2:1046555/1‑100 (MQ=255)
          cTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTT.GGGGC.AAGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..gggg.....ggc                                                                                                 <  1:1949940/101‑3 (MQ=255)
           ttCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTT.GGGGC.AAGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..gggg.....ggca                                                                                                <  2:2133467/101‑4 (MQ=255)
           gatctgATGTGACTTTCGATGCCTCCGGCGGGGATATTT.GGGGC.AAGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..gggg.....ggca                                                                                                <  2:2771009/96‑4 (MQ=255)
            tCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTT.GGGGC.AAGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..gggg.....ggcag                                                                                               <  2:369204/101‑5 (MQ=255)
             ccGGATGTGACTTTCGATGCCTCCGGCGGGGATATTT.GGGGC.AAGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..gggg.....ggcagc                                                                                              <  1:1983164/101‑6 (MQ=255)
              cGGATGTGACTTTCGATGCCTCCGGCGGGGGTATTT.TGGGG.AAGAAGAAAACCATCCCCTT.CATC.TTTCCCC.CAAAAAAC.CCGGGGGCC.C..gggg.....ggcaggg                                                                                             >  2:3374372/1‑95 (MQ=255)
              cGGATGTGACTTTCGATGCCTCCGGCGGGGAGATTT.GGGGG.GAAACAAAACCCAACCCTTT.CATC.TTGCCCC.AAAAAATC.CCCGGGGCC.C..ggcg.....gggggag                                                                                             >  1:2877610/1‑95 (MQ=255)
               ggATGTGACTTTCGATGCCTCCGGCGGGGGGATTT.TGGGG.AAGATGAAAACCATCCCCTT.CATCTTTCCCCC.AAAATTCC.CGGGGGGCC.C..GGGG.....g.....c.ggcgc                                                                                       >  1:2564080/1‑97 (MQ=255)
                gATGTGACTTTCGATGCCTCCGGCGGGGGTATTT.TGGGC.AAGATGAAACCCATCCCTTT.CATC.TTTCCCC.CAATATCC.CGGGGGGCC.C..gggg.....gggaagagc                                                                                           >  1:2771207/1‑93 (MQ=37)
                gATGTGACTTTCGATGCCTCCGGCGGGGATATTT.TGGGG.AAGATGAAAACCATCCCTTT.CATC.TTGCCCC.AAATATCC.CCGGGGGCC.C..gggg.....ggcggcgcc                                                                                           >  2:1973665/1‑93 (MQ=37)
                gATGTGACTTTCGATGCCTCCGGCGGGGATATTT.GGGGC.AAGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..gggg.....ggcagcgcc                                                                                           <  2:408430/101‑9 (MQ=255)
                  tgtgACTTTCGATGCCTCCGGCGGGGGTATTT.GGGGG.AAGATGAAAACCCTCCCTTT.CATC.TTGCCCC.CAATATCC.CCGGGGGCC.CCGGGGG.....G.....C.G.....c....gcccc                                                                            >  1:2993086/1‑101 (MQ=25)
                   gtgACTTTCGATGCCTCCGGCGGGGCTATTT.GGGGG.AAGGTGGAACCCCACCCTTT.AATC.TTTCCCCAAAACATCCATGGGGGCCC.C..GGGG.....G.....A.G.....c....gccccc                                                                           >  2:1560735/1‑100 (MQ=255)
                     gACTTTCGATGCCTCCGGCGGGGGTATTT.GGGGG.AAGATGAAAACCATCCCTTT.CATC.TTGCCCC.CAAAATCC.CCGGGGGCC.C..GGGG.....g.....g.g.....cgcgccccccc                                                                           >  2:2648150/1‑91 (MQ=25)
                                  tCCGGCGGGGATATTT.GGGGC.AAGATGAAAACCATCCCTTT.TATC.TTGCCCC.AAATATCC.CCGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCCCCTCCGcccc                                                              >  2:2949799/1‑99 (MQ=18)
                                   ccGGCGGGGATATTT.GGGGC.AAGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCCCCACCTCCGCCCCg                                                             >  2:1849659/1‑101 (MQ=18)
                                       cggGGATATTT.GGGGC.AAGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGc                                                         >  2:4215023/1‑101 (MQ=25)
                                        ggggATATTT.GGGGC.AAGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCCCTCCCGCCACGGGGcg                                                        >  2:1886278/1‑100 (MQ=18)
                                        ggggATATTT.GGGGC.AAGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCa                                                        >  2:3166966/1‑101 (MQ=25)
                                        ggggAT.TTT.TGGGC.AAAGTTAACCCCCCCCCTTT.CTCT.TTCCCCC.AAATTACC.GGGGGGGCC.G..GGGG.....G.....G.GCCCCCC....CCCCCGCCACTTCCGCCACGGGGCa                                                        <  1:1226654/101‑1 (MQ=255)
                                        gggattatTG.GGCGA.AAGAT.AAACCCCACCCTTT.TCTT.TTGCCCC.CAAATCCC.CGGGGGGCC.G..GGGG.....GGGCCCC.C.....C....CCCCCGCCACTTCCGCCACGGGGCa                                                        <  2:1272302/96‑1 (MQ=255)
                                         ggggttttt.GGGGAAAAGATAAAACCCACCCCTTT.CATC.TTGCCCA.AAATA.CC.CGGGGGGCC.C..GGGGGGGCAG.....C.C.....C....CCCCCGCCACTTCCGCCACGGGGCa                                                        <  2:1528318/95‑1 (MQ=9)
                                         gggATATTT.GGGGC.AAGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAg                                                       >  2:2360976/1‑101 (MQ=25)
                                         gggATATTT.GGGGC.AAGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCCCCACTTCCGCCACGGGGCAg                                                       >  2:869358/1‑101 (MQ=21)
                                            atatTT.GGGGC.AAGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAgcgc                                                    >  2:652466/1‑101 (MQ=25)
                                             tatTT.GGGGC.AAGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGcc                                                   >  2:4414143/1‑101 (MQ=25)
                                             tatTT.GGGGC.AAGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGcc                                                   >  2:2465541/1‑101 (MQ=21)
                                             tatTT.GGGGC.AAGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGACACGGGGCAgcgac                                                   >  2:497705/1‑99 (MQ=21)
                                              ttttgggggA.AAGATAACCCCCCCCCTTTT.CATC.TTCCCCA.AAATCCCC.GGGGGGGCCGG..GGGG.....G.....C.GCCC..C....CCCCCGCCACTTCCGCCACGGGGCAGCGcc                                                   <  1:2865124/96‑1 (MQ=255)
                                              atTT.GGGGC.AAGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGccc                                                  >  2:30930/1‑101 (MQ=25)
                                              atTT.GGGGC.AAGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGccc                                                  >  2:2724658/1‑101 (MQ=25)
                                              atTT.GGGGC.AAGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGG.....G.....G.G.....CGGCGCCCCCGCCCCCTCCCCCCCCGGGCAGCGccc                                                  >  2:1595201/1‑101 (MQ=18)
                                               ttt.GGGGA.CAAAAGAAACCCCTCCCTTT.TGTT.CTCCCCC.AAACTCCC.GGGGGGGCG.CGGGGGG.....G.....C.GCCC..C....CCCCCGCCACTTCCGCCACGGGGCAGCGccc                                                  <  2:4482336/101‑1 (MQ=255)
                                                tt.GGGGC.AAGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCg                                                >  2:2452655/1‑101 (MQ=25)
                                                 t.GGGGC.AAGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCgg                                               >  2:3569181/1‑101 (MQ=25)
                                                 t.GGGGC.AAGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCgg                                               >  2:2578617/1‑101 (MQ=25)
                                                    gacc.AAGATCAACCCCCCCCCTTC.CATC..TCCCCC.AAATTCCC.CGGGGGGCC.C..GGGG.....GGCCCCC.C.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGcc                                             <  2:3473768/98‑1 (MQ=255)
                                                        gcaaaagAAACCCCCCCCTTTCCATC.TCCCCCC.AAATA.CC.GGGGGGGCC.C..GGGG.....GGGC..C.GCC...C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGt                                           <  1:1355929/95‑1 (MQ=255)
                                                         aaGATAAACCCCATCCCTTT.CA.C.TTTCCCC.AAAATTCC.CGGGGGGGC.C..GGGG.....GGGCACC.C.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTg                                         <  2:1326313/101‑1 (MQ=255)
                                                          aGATGAACCCCACCCTTTT.CATC.TGCCCCC.AAATACCC.CGGGGGGCC.G..GGGG.....G.....CAGCC...C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGAc                                       <  1:4201770/101‑1 (MQ=255)
                                                          aGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGa                                        >  1:4239857/1‑101 (MQ=25)
                                                          aGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGa                                        >  1:2492883/1‑101 (MQ=25)
                                                           gATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGAc                                       >  1:198338/1‑101 (MQ=25)
                                                            aTGAAACCCATCCCTTT.CATC.ATGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACg                                      >  1:2645942/1‑101 (MQ=25)
                                                              gAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGaa                                    >  2:3752605/1‑101 (MQ=25)
                                                               aacccccccccTTT.TCTC.CTGCCCC.AAAGTCCC.CGGGGGGCC.CGGGGGG.....G.....C.GCCC..C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGaa                                    <  2:2823794/93‑1 (MQ=255)
                                                               aaaCCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCCGCGCCCCCGCCGTTGACGAAg                                   >  2:1581271/1‑101 (MQ=21)
                                                               aaaCCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAg                                   >  2:190887/1‑101 (MQ=25)
                                                                aaCCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAgg                                  >  1:3136026/1‑101 (MQ=25)
                                                                aaCCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAgg                                  >  2:4326659/1‑101 (MQ=25)
                                                                 cccccccctttt.CTTC.TT.CCCC.AAAATCCC.CGGGGGGCC.C..GGGG.....GGGC..C.GCC...C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGga                                 <  1:3067678/92‑1 (MQ=255)
                                                                  cccATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCCGCGCCCCGGCCGTTGACGAAgggg                                >  2:826190/1‑99 (MQ=21)
                                                                   ccATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGgaga                               >  1:2833371/1‑101 (MQ=25)
                                                                     aTCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGAcc                             >  1:2122948/1‑101 (MQ=25)
                                                                     aTCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGAcc                             >  2:2914303/1‑101 (MQ=25)
                                                                      tCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACcg                            >  1:83676/1‑101 (MQ=21)
                                                                      tCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACcg                            >  1:3846642/1‑101 (MQ=25)
                                                                        ccTTT.CCTT.TTGCCCC.AAAATCCC.CGGGGGGCC.G..GGGG.....GGCCCCC.C.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACtgc                           <  2:1232427/101‑1 (MQ=255)
                                                                        ccTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGCAGGAGACcgcg                          >  2:1603274/1‑101 (MQ=21)
                                                                        ccTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACcgcg                          >  1:1338230/1‑101 (MQ=25)
                                                                        ccTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACcgcg                          >  1:2002142/1‑101 (MQ=25)
                                                                        ccTTT.CACC.GTCCCCC.AAATTCCC.CGGGGGGGC.C..GGGG.....GGGCCCC.C.....C....CCCCCGCCACTTCCGCCACGGGACAGCGCCCCGGCCGTTGACGAAGGAGACcgc                           <  2:1835342/101‑1 (MQ=255)
                                                                          ttt.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGAt                        >  1:444767/1‑101 (MQ=25)
                                                                            ttcccc.TTCCCCC.AAATGCCC.CGGGGGGCC.C..GGGG.....GGC...C.GCCC..C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGAt                        <  2:3373699/96‑1 (MQ=255)
                                                                            t.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGt                      >  2:3346597/1‑101 (MQ=25)
                                                                            t.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGt                      >  2:3558206/1‑101 (MQ=25)
                                                                            t.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGt                      >  1:3649654/1‑101 (MQ=25)
                                                                            t.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGt                      >  2:3796993/1‑101 (MQ=25)
                                                                              cATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGtt                     >  2:4469830/1‑101 (MQ=25)
                                                                              cATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGtt                     >  1:3058043/1‑101 (MQ=25)
                                                                              cATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGtt                     >  2:3897908/1‑101 (MQ=25)
                                                                               aTC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGttt                    >  1:1349631/1‑101 (MQ=25)
                                                                               aTC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCCCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGttt                    >  1:1897689/1‑101 (MQ=25)
                                                                                    tGCCCC.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCaaa                >  1:1549628/1‑101 (MQ=25)
                                                                                      cccc.AAATATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCAGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAg              >  2:3654005/1‑101 (MQ=25)
                                                                                           aaaTATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATcc          >  1:1182454/1‑101 (MQ=25)
                                                                                            aaTATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCt         >  2:2849596/1‑101 (MQ=25)
                                                                                            aaTATCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCt         >  1:695372/1‑101 (MQ=25)
                                                                                             atatCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTg        >  2:645818/1‑101 (MQ=37)
                                                                                             atatCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTg        >  2:449998/1‑101 (MQ=37)
                                                                                              tatCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGa       >  1:3437014/1‑101 (MQ=37)
                                                                                               atCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGAt      >  2:2788189/1‑101 (MQ=37)
                                                                                               atCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGGTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGac      >  2:3661330/1‑100 (MQ=25)
                                                                                                tCC.CGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGAGGAAGGAGACCGCGATGTTTCAAAAGATCCTGATc     >  1:4002554/1‑101 (MQ=37)
                                                                                                 cc.cGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCg    >  1:3028055/1‑101 (MQ=37)
                                                                                                  c.cGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGc   >  1:1907525/1‑101 (MQ=37)
                                                                                                    cGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTNAAAAGATCCTGATCGcc  >  2:892503/1‑101 (MQ=37)
                                                                                                    cGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGcc  >  2:4353945/1‑101 (MQ=37)
                                                                                                    cGGGGGGCC.C..GGGGGGCA.G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGcc  >  1:4382835/1‑101 (MQ=37)
                                                                                                          |                                                                                                                 
GCTTCGGGATCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTT.GGGGC.AAGATGAAACCCATCCCTTT.CATC.TTGCCCC.AAATATCC.CGGGGGGCC.C..GGGG.....G.....C.G.....C....CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCC  >  NC_014034/1639898‑1640088

Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG