New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 744688	68 (0.330)	10 (0.050)	7/172	30.4	0.22	intergenic (+73/+139)	idi2/bchO	isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
	?	NC_014034	= 974293	2 (0.010)					intergenic (+173/+86)	RCAP_rcc00884/RCAP_rcc00885	hypothetical protein/hypothetical protein
Rejected: Position hash score below cutoff.

TGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGG  >  NC_014034/744590‑744785                                                                                                     |                                                                                                   ttctCTTCCCGCGGGTGACGGCCTGGGTTTCCGCCGGGGGCGCGCTTGCGCCTCGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTggg                                                                                                  <  2:226194/98‑1 (MQ=21)  gctCTTGCCGCCGGTGACGGGGTGAGCTTGGGCCCGGGGCGCGCTTGCCCGGGGGGCGGCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTgggg                                                                                                 <  1:4095490/99‑1 (MQ=18)   ttCTTCCCGCGGGTGCGGCCCTGAGTTTTCCCCGGGGGCGCGCTTGCCCCGCGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGc                                                                                                <  1:4666363/100‑1 (MQ=18)    tCTTCCCGCGGGTGACGGCCGGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCa                                                                                               <  2:4048439/101‑1 (MQ=37)        tCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC.GGGGGCTCCGCCCCCCGACCCCCGGGATATTTGGGGGAAGat                                                                                           >  2:648466/1‑101 (MQ=255)        tCCGCCGGGGACGGCTGGAGATTCCCCCCGGGGCGCGCTTGCGCCTGGGGCGACCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGat                                                                                           <  2:2135286/101‑1 (MQ=21)         ccgccgGTGGCGGCCTGAGATTCCGCCCGGGGCGCTCTGGCCCCTCGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGatg                                                                                          <  1:3768294/101‑1 (MQ=21)           gcgggTGGCGGCCTGAGATTTCGCCGGGGGCGCGCTTGCGCCGCGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGatgaa                                                                                        <  1:3088292/98‑1 (MQ=21)            ccgGGGGCGGCCGGAGTTTTCGCCCGGGGCGCGCTTCCGCCAGGGGCGCCCCG.CC.GGGGGCTACGCCCCCGGACCCCCGGGATATTTGGGGCAAGatgaaa                                                                                       <  1:3098180/101‑1 (MQ=18)              ggggccGGCCTGCGATGGCGCGCGGGGCGCGCTTGCGCGTGGGGCCCCCCG.CC.GGGGGCTCCGCCCCCGGTCCCCCGGGATATTTGGGGCAAGatgaaatg                                                                                     <  1:4653592/96‑1 (MQ=17)              ggggACGGCCGGAGTTTCCGCCCGGGGCGCGCTTGCGCCCCGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGatgaaatg                                                                                     <  1:2032582/98‑1 (MQ=21)              ggTGACGGCCGGAGTTTCCCCCGGGGGCGCGCTTGCGCCGGGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGatgaaatg                                                                                     <  1:2540802/101‑1 (MQ=18)               ggggcGGCCTGAGTTTCCGCCCGGGGCGCGCTTGCGCCTCGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGatgaaatga                                                                                    <  1:1484355/97‑1 (MQ=21)                 ggcGGCCGGAGTTTGCGCCGGGGGGGCCCTTCCCCCTGGGGCGCCCCG.CC.GGGGGCTCCGGCCCCGGACCCCCGGGATATTTGGGGCAAGATGAaatgaat                                                                                  <  1:1484286/99‑1 (MQ=17)                 ggcGGCCGGAGATTCCGCCGGGGGCGCGCTTCCCCCTCGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAaatgaat                                                                                  <  1:2262852/99‑1 (MQ=18)                 gcggcccTGAGTTTCCGCCGGGGGCGCGCTGGCCCCCCGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAaatgaat                                                                                  <  1:1013360/96‑1 (MQ=18)                      ctgaagcttccGCCGGGGGCCCGTTTGCCCCGCGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACtt                                                                            <  1:2408931/91‑1 (MQ=17)                      cgtgcgaTTTCGCCGGGGGCGCGCTTGCCCCTCGGGCCCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACtt                                                                            <  1:2209045/96‑1 (MQ=21)                      ccTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC.GGGGGCTCCGCCCCCGGGCCCCCGGGGTATTTGGGGCAAGATGAAATGAATG.ACtt                                                                            >  2:4264227/1‑101 (MQ=255)                        tGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC.CGGGGGGCCGCCCCCCGACCCCCCGGGTATTTGGGGGCAGCTGAAATGAATG.GCTTTc                                                                          >  1:1367831/1‑101 (MQ=25)                        ggaggTTCCGCCGGGGGCGCGCTTGCGCCTGGGCCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTc                                                                          <  1:2707451/100‑1 (MQ=21)                         gagtTTTCGCGCGGGGCGCGCTCGCGCCGCGGGCCCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTcc                                                                         <  1:4217391/101‑1 (MQ=21)                          ggaTTGCGCGGGGGGCCCGGTTGCCCGGGGGGCCCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCg                                                                        <  2:4313904/100‑1 (MQ=17)                          agaTTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCC.GGGGGTCCCCCCCCCCGCCCCCCGGGGATTTTGGGGC.AGAAGAACAAGATG.ACTTTccc                                                                        >  2:447467/1‑100 (MQ=255)                           gtttccGCCGGGGGCGCGCTTGCCCCTGGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGt                                                                       <  1:325702/96‑1 (MQ=21)                            gtctcccggggggGGCGCTGGCCCCCCGGCCGCCCCG.CC.GGGGGCTCGGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTc                                                                      <  2:3192933/92‑1 (MQ=18)                             tttCGCCCGGGGCGCGCTTGCGCCGGGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCt                                                                     <  2:2524583/101‑1 (MQ=255)                             ttccGCCGGGGGCCCCCTGGCCCCGCGGGCCCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCt                                                                     <  1:1913486/98‑1 (MQ=18)                             ttccGCCCGGGGCGCGCTTGCGCCTCGGGCCCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCt                                                                     <  2:427645/98‑1 (MQ=255)                                cGCCGGGGGCGCGCGTGCGCCCCGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTgcg                                                                  <  1:4670791/101‑1 (MQ=21)                                   cgggggCGCGCTGGCCCCCCGGGCCCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTgcggcg                                                               <  1:1023172/99‑1 (MQ=21)                                    gggggCGCG.TTGCGCCCGGGGCGACCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGt                                                             <  2:1405321/100‑1 (MQ=21)                                    cGGGGCGCGCTTGCGCCTCGGGCGACCCG.CCGGGGGGGCCCCCCCCCGGCCCCCCGGGGGGATTGGGG.AAGACGAAAAGAAAGAATTTTCCCCCTgcggcg                                                               >  1:722377/1‑101 (MQ=255)                                        gcgcgtTTCCCCCTCGGGCCCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACa                                                          <  2:1047642/101‑1 (MQ=21)                                         gggccTTGCGCGCGGGGCGACCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAg                                                         <  1:655225/97‑1 (MQ=21)                                          gcgcTGGCCCCCGGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGc                                                        <  1:3721287/101‑1 (MQ=21)                                            cctgccgcCTCGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCt                                                      <  2:912010/96‑1 (MQ=255)                                              tggcgcCTGGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGt                                                    <  2:2915441/99‑1 (MQ=255)                                               tGCGCCTGGGCCCCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTc                                                   <  2:3619740/101‑1 (MQ=25)                                                 gccggcGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTccc                                                 <  1:447504/96‑1 (MQ=255)                                                  ccccggggCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCa                                                <  1:310532/96‑1 (MQ=255)                                                      ggggCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCAcccc                                            <  1:3580161/100‑1 (MQ=255)                                                       gggccccccG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCt                                           <  1:4281163/95‑1 (MQ=255)                                                       gggCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCt                                           <  1:4143839/101‑1 (MQ=255)                                                       gccccccccG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCt                                           <  2:167442/95‑1 (MQ=255)                                                       agcgcccccG.CC.GAGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCt                                           <  1:3121064/95‑1 (MQ=255)                                                        ggCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTg                                          <  2:631339/101‑1 (MQ=255)                                                         gcaccccG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGc                                         <  2:3892020/97‑1 (MQ=255)                                                          cgccccG.CC.GGGGGCGCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCt                                        <  2:4164902/98‑1 (MQ=255)                                                          ccccccG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCt                                        <  1:836405/98‑1 (MQ=255)                                                            ccccG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCttt                                      <  1:4532702/100‑1 (MQ=255)                                                             cccG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCtttt                                     <  1:2808324/101‑1 (MQ=255)                                                                g.cc.gGGGGCTCCGCCCCCGGGCCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCt                                  <  2:573098/101‑1 (MQ=255)                                                                g.cc.gGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCt                                  <  1:648527/101‑1 (MQ=255)                                                                g.cc.gGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCt                                  <  1:2172147/101‑1 (MQ=255)                                                                g.cc.gGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCt                                  <  1:2449469/101‑1 (MQ=255)                                                                   c.gGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTg                                <  2:707824/101‑1 (MQ=255)                                                                       gggCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCa                             <  2:1091610/101‑1 (MQ=255)                                                                       gggCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCa                             <  1:865334/101‑1 (MQ=255)                                                                       gggCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCa                             <  2:722302/101‑1 (MQ=255)                                                                        ggCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCaa                            <  1:1493269/101‑1 (MQ=255)                                                                          cTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCaaaa                          >  1:2654078/1‑101 (MQ=255)                                                                            ccGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATa                        <  2:1367736/101‑1 (MQ=255)                                                                            ccGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATa                        <  1:3088889/101‑1 (MQ=255)                                                                              gCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACg                      <  1:1694239/101‑1 (MQ=255)                                                                              gCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACg                      <  2:4167734/101‑1 (MQ=255)                                                                               cccccGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGc                     >  2:4226269/1‑101 (MQ=255)                                                                                ccccGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGcc                    <  1:1003502/101‑1 (MQ=255)                                                                                 cccGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCg                   <  1:4436545/101‑1 (MQ=255)                                                                                         ccggggATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATTCGCCGGAGGGTGc           <  2:749407/98‑1 (MQ=255)                                                                                         cccGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGc           >  1:4599230/1‑101 (MQ=255)                                                                                          ccGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCg          <  1:3326159/101‑1 (MQ=255)                                                                                          ccGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCg          <  1:4094243/101‑1 (MQ=255)                                                                                             ggATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCgggg       <  2:4598930/101‑1 (MQ=255)                                                                                               atatTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCgggggg     <  1:3458358/101‑1 (MQ=255)                                                                                                tatggggggCAAGAGAAAATGAATG.CCTTCCCGTCTGCGCCGGTCCAGCCTGTCCCCCCCCTGCTTTTCCTGGGCAAAATCCCCCGGGGGGTGCGGGGGGc    <  2:3279180/96‑1 (MQ=21)                                                                                                  tttGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCgg  <  1:4264515/101‑1 (MQ=255)                                                                                                     |                                                                                                   TGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATG.ACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGG  >  NC_014034/744590‑744785 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 31 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG