BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1608051 =	7 (0.030)	34 (0.150)	4/186	34.9	0.25	intergenic (+321/‑26)	RCAP_rcc01484/murD	hypothetical protein/UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
*	?	NC_014034	3504133 =	199 (0.840)	34 (0.150)	4/186	34.9	0.25	intergenic (‑26/+57)	recO/RCAP_rcc03309	DNA repair protein RecO/hypothetical protein
Rejected: Position hash score below cutoff.

Only 100 of 217 total aligned reads displayed.


GAACACCTCGACAATCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTGCGGCCGTGCC  >  NC_014034/3504033‑3504233


 aaCGCCTCGACAATCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGGGCCCGTGACG.AAGG.CC.GGGGGttt                                                                                                       <  2:163415/101‑1 (MQ=255)


  actccTCGACAATCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGtttt                                                                                                      <  1:272960/98‑1 (MQ=255)


  accccTCGACAATCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGtttt                                                                                                      <  2:1692796/98‑1 (MQ=255)


  acacCTCGACAATCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.GC.GGGGGgttt                                                                                                      >  2:3305539/1‑101 (MQ=255)


      cTCGACAATCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.c                                                                                                 <  1:2470870/101‑1 (MQ=255)


      cTCGACAATCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.c                                                                                                 <  2:2534007/101‑1 (MQ=255)


        cGACAATCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.GC.GGGGGGTTTGCA.ccc                                                                                               >  1:4547534/1‑101 (MQ=255)


          aCAATCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.ccccc                                                                                             <  2:181022/101‑1 (MQ=255)


          aCAATCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.ccccc                                                                                             <  1:1762682/101‑1 (MQ=255)


           cAATCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCg                                                                                            <  1:1914265/101‑1 (MQ=255)


            aaTCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCgg                                                                                           <  1:3422388/101‑1 (MQ=255)


                gCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGCAGGG.CC.GGGGGGGTTGTC.CCCCCGCGcc                                                                                        >  2:4043206/1‑101 (MQ=255)


                  cGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGGGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CCGGGGGGTTTTGCC.CCCCCGGGcccc                                                                                      >  1:1159661/1‑101 (MQ=255)


                   gAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCg                                                                                    <  1:3864864/101‑1 (MQ=255)


                   gAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCg                                                                                    <  2:1086060/101‑1 (MQ=255)


                    aGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGc                                                                                   <  2:3335173/101‑1 (MQ=255)


                       tttCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGGA.CCCCCGGGGCCCCGCCgg                                                                                >  1:1929125/1‑101 (MQ=255)


                        ttCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGa                                                                               <  1:4611878/101‑1 (MQ=255)


                        ttCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGGTTTGCACCCCCCGGGcccccccggg                                                                                >  2:3753209/1‑96 (MQ=255)


                        ttCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.CGGGGTTTTGCA.CCCCCCGGGCCCCGCAGGa                                                                               >  2:2136448/1‑101 (MQ=255)


                        ttCGCCGTGCAGGCGGGTCGAAAGGATGGGGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.GC.GGGGGGTTTGCA.CTCCCGTGCCGCCGCaagg                                                                               >  2:2894240/1‑98 (MQ=255)


                         tCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGa.t                                                                             <  2:4204853/101‑1 (MQ=255)


                         tCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGa.t                                                                             <  1:1274675/101‑1 (MQ=255)


                          cGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGa.ta                                                                            <  1:3666303/101‑1 (MQ=255)


                           gCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGa.tat                                                                           <  1:3538478/101‑1 (MQ=255)


                            ccGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.GC.GGGGGGTTTTCA.CCCCCGGGCGCCCGCCGGA.AAtt                                                                          >  2:1366930/1‑101 (MQ=255)


                             cGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TAttt                                                                         <  1:1030255/101‑1 (MQ=255)


                             cGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TAttt                                                                         <  1:96389/101‑1 (MQ=255)


                              gTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTg                                                                        <  1:1108601/101‑1 (MQ=255)


                               tGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGGTTTGCA.CCCCCCGGCCCCCCCAGGG.TATTTGa                                                                       >  1:816960/1‑101 (MQ=255)


                               tGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.AC.GGGGGGTNTGCA.CCCCCGGGCCCCCGCAGGA.TATTTgc                                                                       >  1:1528254/1‑100 (MQ=255)


                                gCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGGTTTGCA.CCCCCGGGCCCCCGCCGGG.TATTTGAg                                                                      >  2:4573763/1‑101 (MQ=255)


                                   ggCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGGTTTGCA.CCCCCGGGCCCCCCCAGGA.TATTTGAGGCa                                                                   >  2:1335853/1‑101 (MQ=255)


                                     cGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGGTTTGCA.CCCCCGGGCCCCCGCAGGG.TATTTGAGGCAAg                                                                 >  1:438680/1‑101 (MQ=255)


                                      gggTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGa                                                                <  1:2434353/101‑1 (MQ=255)


                                        gTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATa                                                              <  2:825693/101‑1 (MQ=255)


                                         tCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATaa                                                             <  1:953800/101‑1 (MQ=255)


                                         tCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATaa                                                             <  1:1621143/101‑1 (MQ=255)


                                           gAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGGCCC.GGGGGGTTTGCC.CCCCCGGGCCCCCCCGGGG.ATTTTGAGGAAAAAAaaa                                                            >  1:1694376/1‑101 (MQ=255)


                                           gAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATaaaa                                                           <  2:2881975/101‑1 (MQ=255)


                                           gAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATaaaa                                                           <  1:1503566/101‑1 (MQ=255)


                                           gAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGGTTTTGA.CCCCCCGGCCCCCCCCGGACAATTTGGGGCagagaaaa                                                            >  2:3963803/1‑94 (MQ=255)


                                           gAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGGTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATaaaa                                                           >  2:2644159/1‑101 (MQ=255)


                                           gAAAGGATGGTGCCGCTGTCCTGCCAGTCCATGGTGCCCGTGACG.AAGC.CC.GGGTGTTTTGCA.CCCCCGCGCCCCCGCAGGA.TATTTGAGGCAAGATaaaa                                                           <  1:2630980/101‑1 (MQ=38)


                                            aaaGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAg                                                          <  1:4301059/101‑1 (MQ=255)


                                            aaaGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAg                                                          <  1:2901891/101‑1 (MQ=255)


                                            aaaGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGGTTTTCA.CCCCCCGGGCCCCCCCGGG.TATTTTGGGGAAGATaaaaa                                                          >  1:1890201/1‑100 (MQ=255)


                                            aaaGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.CGGGGGTTTGCA.CCCCCCGGCCCCCCCAGGA.GATTTTAGGGGAGAGAAAAg                                                          >  1:4333841/1‑101 (MQ=255)


                                             aaGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAga                                                         >  2:1958051/1‑100 (MQ=255)


                                              aGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCg                                                        <  1:974640/101‑1 (MQ=255)


                                              aGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGGTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAgag                                                        >  2:1421181/1‑99 (MQ=255)


                                                gATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGaa                                                      <  1:1658366/101‑1 (MQ=255)


                                                gATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGGTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTTAGGCAAGATAAAAGCGaa                                                      >  1:1989381/1‑101 (MQ=255)


                                                 aTGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGaaa                                                     <  1:3956260/101‑1 (MQ=255)


                                                 aTGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGaaa                                                     <  1:1135591/101‑1 (MQ=255)


                                                  tGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGAGaaaa                                                    >  2:4481241/1‑100 (MQ=255)


                                                     tGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCg                                                 <  1:471431/101‑1 (MQ=255)


                                                        cGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCgggg                                              >  2:2296609/1‑101 (MQ=255)


                                                         gCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGt                                             <  2:4253436/101‑1 (MQ=255)


                                                          cTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGGTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTc                                            >  1:1379047/1‑101 (MQ=255)


                                                          cTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGGTTTGCA.CCCCCCGGCCCCCCCCGGA.TATTTGGGGGAAGATAAAAACGAAAGCCgggggc                                            >  1:1877610/1‑99 (MQ=255)


                                                           tGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCa                                           <  2:2014926/101‑1 (MQ=255)


                                                            gTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGGTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGGCAg                                          >  1:3009256/1‑101 (MQ=255)


                                                             tCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGt                                         <  1:3753484/101‑1 (MQ=255)


                                                              cTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGGTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTc                                        >  2:251327/1‑101 (MQ=255)


                                                               ttGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCt                                       <  1:48800/101‑1 (MQ=255)


                                                                  ccAGTCCATGGTGCCCGTGACG.AAGG.CC.GGTGTTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTc                                    <  1:32842/101‑1 (MQ=255)


                                                                  ccAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTc                                    <  2:345314/101‑1 (MQ=255)


                                                                  ccAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTc                                    >  2:2556222/1‑101 (MQ=255)


                                                                  ccAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGGCAGTCTTTc                                    >  2:3800819/1‑101 (MQ=255)


                                                                     gTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGt                                 <  2:438643/101‑1 (MQ=255)


                                                                     gTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGt                                 <  1:3486306/101‑1 (MQ=255)


                                                                      tCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTc                                <  2:1137970/101‑1 (MQ=255)


                                                                      tCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTc                                <  1:2227011/101‑1 (MQ=255)


                                                                       ccATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTcc                               <  1:717159/101‑1 (MQ=255)


                                                                         aTGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGt                             <  1:4224500/101‑1 (MQ=255)


                                                                         aTGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGt                             <  2:1743670/101‑1 (MQ=255)


                                                                         aTGGTGCCCGTGACG.AAGG.CC.GGGGGGTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCGGTCTTTCAGTCCGt                             >  2:3073305/1‑101 (MQ=255)


                                                                          tGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTc                            <  2:1252972/101‑1 (MQ=255)


                                                                           ggTGCCCGTGACG.AAGG.CCGGGGGGTTTTTGC.CCCCCGGGCCCCCCCGGGA..ATTTTAGGGCAGATAAAAAAGAAAACCCGGGGGAGGGTTTTAGTcccgct                           >  1:4145632/1‑97 (MQ=255)


                                                                           ggTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCt                           >  2:615319/1‑101 (MQ=255)


                                                                             tGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTc                         <  2:2907393/101‑1 (MQ=255)


                                                                              gCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCa                        <  2:3423004/101‑1 (MQ=255)


                                                                               cccGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCAt                       <  2:3602836/101‑1 (MQ=255)


                                                                                 cGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATcc                     <  1:1847056/101‑1 (MQ=255)


                                                                                   tGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAg                   <  2:1916205/101‑1 (MQ=255)


                                                                                   tGACG.AAGG.CC.GGGGGGTTTGCA.CCCCCGGGCCCCCGCAGGG.TATTTGAGGCAAGATAAAAGCGAAAGACGGGGGCAGTCTTTCAGTCCGTCTTCATCCAg                   >  2:4628505/1‑101 (MQ=38)


                                                                                   ggACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAg                   <  2:523023/100‑1 (MQ=255)


                                                                                      cG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAg                <  2:3556780/101‑1 (MQ=255)


                                                                                       g.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGc               <  1:358247/101‑1 (MQ=255)


                                                                                       g.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGc               >  1:2915877/1‑101 (MQ=255)


                                                                                         aaGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCg              <  2:3835899/101‑1 (MQ=255)


                                                                                         aaGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCg              <  1:4628806/101‑1 (MQ=255)


                                                                                         aaGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGGCAGTCTTTCAGTCCGTCTTCATCCAGAAGCg              >  1:3098279/1‑101 (MQ=255)


                                                                                          aGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGt             <  2:4291419/101‑1 (MQ=255)


                                                                                           gg.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTg            <  2:4333549/101‑1 (MQ=255)


                                                                                            g.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTGc           <  2:3821362/101‑1 (MQ=255)


                                                                                                     gTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTGCGGCCggg    >  1:2328165/1‑99 (MQ=255)


                                                                                                      ttttGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTGCGGCCGTGc   >  1:2544784/1‑101 (MQ=255)


                                                                                                       tttGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTGCGGCCGTGcc  <  2:2915648/101‑1 (MQ=255)


GAACACCTCGACAATCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACG.AAGG.CC.GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGA.TATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTGCGGCCGTGCC  >  NC_014034/3504033‑3504233

Base quality scores:


ATCG

< 3 ≤


ATCG

< 15 ≤


ATCG

< 25 ≤


ATCG

< 33 ≤


ATCG

< 41 ≤


ATCG