New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1965238	7 (0.040)	4 (0.020)	4/138	29.1	0.22	intergenic (+6/+86)	bdhA/RCAP_rcc01818	3‑hydroxybutyrate dehydrogenase/hypothetical protein
	?	NC_014034	= 2474929	21 (0.090)					intergenic (‑92/+34)	RCAP_rcc02301/engA	hypothetical protein/GTP‑binding protein EngA
Rejected: Position hash score below cutoff.

TTCCCCCAAGGTGACAGGAAACCGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGCGGGGGGGCGCAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGACA.TCAGCCCTTCGGTTTCGAGGGCAGGCCCTTGTCC.TTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGC  >  NC_014034/2474829‑2475029                                                                                                     |                                                                                                       ttCCCCCAAGGTGACAGGAAACCGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGccccc                                                                                                       >  1:2976585/1‑101 (MQ=255)   cccccAAGGTGACAGGAAACCGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCcg                                                                                                     >  1:1195677/1‑101 (MQ=255)   cccccAAGGTGACAGGAAACCGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGGGCGGGGGGG.GCAGccccccc                                                                                                     >  2:3498976/1‑100 (MQ=255)         aGGTGACAGGAAACCGCGGCCCCCCCCACCCGAAGGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGTTGC.GGGGGGCGCAGCCCCCCGCggggc                                                                                               >  1:2596793/1‑99 (MQ=255)               cAGGAAACCGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCggggccccccg                                                                                         >  1:784385/1‑93 (MQ=37)               cAGGAAACCGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCCCggggtggcgcc                                                                                         >  2:950855/1‑93 (MQ=37)                      ccGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGTCGCCCCCGGGTTGc                                                                                  >  1:500718/1‑101 (MQ=25)                        gcgGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGGCGCCCCGGGGTTTccc                                                                                >  1:1318469/1‑101 (MQ=25)                                                 ggCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGGCGCCTCGGGGTTGCCCGCGGGGGCA.TCAGCCCCTCGGgttt                                                      >  1:2634824/1‑100 (MQ=21)                                                         cTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGGCGCCTCGGGCCTGCCCCAGGCGACA.TCAGCCCCTCGGGTTCGAGGGCAg                                              >  2:4559482/1‑101 (MQ=21)                                                            ggCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGTCGCCTCGGGCCGGCCCCCGGGGACA.TCAGCCCCTCGGTTTCGGGGGGGGGcc                                           >  1:3031755/1‑101 (MQ=18)                                                                aaaTACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGGCGCCTCGGGCTTGGCCGAGGCGACA.TCAGCCCTTCGGGTTCGAGGGCGGGCCCTTg                                       >  2:234391/1‑101 (MQ=25)                                                                 aaTACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGCCGCCCCGGGCGTGCCCGGGGGGGCA.CCAGCCCTTCCGTTTTGGGGGCGGGGCCGTGt                                      >  2:4256216/1‑101 (MQ=12)                                                                        aaGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGGAGCCTCGGGCCTGGCCGAGGCGACA.CCAGCCCTTCGGGTTCGAGGGCAGGACCTTGTCC.Tttcg                              >  2:815171/1‑101 (MQ=18)                                                                            cGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGTCCCCCCGGGCTTTCCCCAGGGGGCC.TCAGCCCCTCGGTTTCGGGGGGAGGCCCCTGTCC.tttggcggg                          >  1:495413/1‑94 (MQ=12)                                                                             ggggggTGC.GGGGGGCGCAGCCCCCCGCGGGTCGCCTCGGGGTTGCCCCAGGCGACA.GCAGCCCTTCGGTTTCGAGGGCAGGCCCTTGTCC.TTGCGTgcgg                         >  2:3872753/1‑101 (MQ=25)                                                                              gggggTGC.GGGGGGCGCAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGACA.TCAGCCCTTCGGTTTCGAGGGCAGGCCCTTGTCC.TTGCGTgcggc                        >  1:2876307/1‑101 (MQ=255)                                                                              gggggTGC.GGGGGGCGCAGCCCCCCGCGGGTCGCCCCCGGGGTGCCCCAGGCGACC.TCAGCCCCTCGGTTTCGGGGGGAGGCCCCTGTCC.TTGCGTgcggc                        >  2:2491566/1‑101 (MQ=18)                                                                              gggggTGC.GGGGGGCGCAGCCCCCCGCGGGGCGCCCCCGGCTTGCCCGGGGCGGCA.TCAGCCCCTCCGGTTCGAGGGCCGGCCCTTGTTC.CCGCGGgcggc                        >  1:2912582/1‑101 (MQ=12)                                                                                   gtgcggggggCGCAGCCCCCCGCGGGTCGCCTCGGGCTTTCCCGAGGCGACA.TCAGCCCTTCGGTTTCGAGGGCAGGCCCTTGTCC.TTGCGTGCGGCgtgt                    >  2:2820956/5‑101 (MQ=255)                                                                                     gcggggggCGCAGCCCCCCGCGGGGCGCCTCGGGCTTGCCCGGGGCGGCA.CCAGCCCCTCGGTTTCGAGGGCAGGCCCTTGTCC.TTGCGTGCGGCGGGttt                  >  1:1381075/3‑101 (MQ=25)                                                                                       ggggggCGCAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGACA.TTAGCCCTTCGGTTTCGAGGGCAGGCCCTTGTCC.TTGCGTGCGGCGTGTttct                >  1:2930686/1‑101 (MQ=255)                                                                                           ggCGCAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGCGGCGGCA.TCAGCCCTTCGGTTTCGAGGGCAGGCCCTTGTCC.TTGCGTGCGGCGGGGTTCTTTGc            >  1:4388479/1‑101 (MQ=37)                                                                                             cgcAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGACA.TCAGCCCTTCGGTTTCGAGGGCAGGCCCTTGTCC.TTGCGTGCGGCGTGTTTCTTCGCCt          >  2:274791/1‑101 (MQ=255)                                                                                              gcAGCCCCCCGCGGGGCGCCCCGGGCTTTCCCCGGGCGGCACCCACCCCTCCGGTTT.GCGGGCAGGGCCCTGTCC.TTTCGTGGGGGGGGTTTCTTTGGCTc         >  2:4123025/1‑101 (MQ=255)                                                                                                aGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGACA.TCAGCCCTTCGGTTTCGAGGGCAGGCCCTTGTCC.TTGCGTGCGGCGGGTTTCTTCGCCTCGa       >  2:1322282/1‑101 (MQ=255)                                                                                                   cccccGCGGGTCGCCTCGGGCTTGCCCGAGGCGACA.TCAGCCCTTCGGTTTCGAGGGCAGGCCCTTGTCC.TTGCGTGCGGCGTGTTTCTTCGCCTCGACGt    >  2:2101284/1‑101 (MQ=255)                                                                                                    ccccGCGGGTCGCCTCGGGCTTTCCCGAGGCGACA.AAAGGCCTTTGGTTTTTCGGGGAGGTCCTTGTCCTTTGCTTGGGGCG.GTTTTTTTGCCTCgtcctt   >  2:2984704/1‑96 (MQ=9)                                                                                                     cccGCGGGTCGCCTCGGGCTTGCCCGAGGCGACA.TCAGCCCTTCGGTTTCGAGGGCAGGCCCTTGTCC.TTGCGTGCGGCGTGTTTCTTTGCCTCGACGTGc  >  2:3262486/1‑101 (MQ=255)                                                                                                     |                                                                                                       TTCCCCCAAGGTGACAGGAAACCGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGCGGGGGGGCGCAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGACA.TCAGCCCTTCGGTTTCGAGGGCAGGCCCTTGTCC.TTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGC  >  NC_014034/2474829‑2475029 Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 19 ≤  ATCG  < 30 ≤  ATCG  < 39 ≤  ATCG