New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 3214783	NA (NA)	83 (0.430)	61/164	5.9	0.99	intergenic (‑39/+19)	dctQ3/dctP3	TRAP C4‑dicarboxylate transport system permease subunit DctQ/TRAP C4‑dicarboxylate transport system permease subunit DctP
	?	NC_014034	3214784 =	1 (0.000)					intergenic (‑40/+18)	dctQ3/dctP3	TRAP C4‑dicarboxylate transport system permease subunit DctQ/TRAP C4‑dicarboxylate transport system permease subunit DctP
Rejected: Position hash score below cutoff.

TCGCCGTCGCGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCGGGGTCAG  >  NC_014034/3214684‑3214882                                                                                                               |                                                                                                   tcgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........c                                                                                                    <  2:3412305/101‑1 (MQ=255) tcgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........c                                                                                                    >  2:2269526/1‑101 (MQ=255) tcgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........c                                                                                                    <  1:2015679/101‑1 (MQ=255)  cgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........cg                                                                                                   >  1:1006911/1‑101 (MQ=255)  cgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........cg                                                                                                   <  2:3836471/101‑1 (MQ=255)  cgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........cg                                                                                                   >  1:518044/1‑101 (MQ=255)  cgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........cg                                                                                                   <  1:4434413/101‑1 (MQ=255)   gccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........cgg                                                                                                  >  1:1672838/1‑101 (MQ=255)   gccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........cgg                                                                                                  <  1:2184754/101‑1 (MQ=255)    gcgtcgcGATGATCTCCTTAATCAGCAGCTCTTCGGCCCGGTCGCGGATGCGCAGCATGCCGGCCCCCGCTTAGGTCATGGAAAGAAAGGGAAAGgg..........cggc                                                                                                 <  2:783079/100‑1 (MQ=255)    ccggcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........cggc                                                                                                 <  1:2709577/101‑1 (MQ=255)     cgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGg..........cggcg                                                                                                <  1:974181/101‑1 (MQ=255)      gtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........GGgcgc                                                                                               >  1:591967/1‑101 (MQ=255)      gtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGgcgc                                                                                               <  2:4141811/101‑1 (MQ=255)      gtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGgcgc                                                                                               <  1:794422/101‑1 (MQ=255)      gtcgcGATGAGCGCGGCAATCAGCACCTCTAGGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGgcgc                                                                                               >  1:4147846/1‑101 (MQ=255)       tcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGcgcc                                                                                              <  1:184857/101‑1 (MQ=255)       tcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGcgcc                                                                                              <  1:4363767/101‑1 (MQ=255)        cgcgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGcgccg                                                                                             >  2:3462215/1‑101 (MQ=255)        cgcgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGcgccg                                                                                             >  2:3344141/1‑101 (MQ=255)         gcgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGcgccgt                                                                                            <  2:539159/101‑2 (MQ=255)         gcgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGcgccgt                                                                                            >  1:2010649/1‑100 (MQ=255)           gATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........GGGCGccgtcc                                                                                          >  1:3636187/1‑101 (MQ=255)           gATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtcc                                                                                          <  1:1630505/101‑1 (MQ=255)           gATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtcc                                                                                          <  2:2939754/101‑1 (MQ=255)           gATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtcc                                                                                          <  2:452922/101‑1 (MQ=255)             tGAGCGCGTCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccgg                                                                                        >  2:28437/1‑100 (MQ=255)              gAGCGCGGCAATCAGCACCTCTTCGTCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggc                                                                                       <  2:473506/101‑3 (MQ=255)              gAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggc                                                                                       <  1:4281416/101‑3 (MQ=255)              gAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggc                                                                                       >  1:3359271/1‑99 (MQ=255)                 cgcgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgcc                                                                                    <  1:4484222/101‑6 (MQ=255)                 cgcgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgcc                                                                                    <  1:3027559/101‑6 (MQ=255)                 cgcgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgcc                                                                                    <  2:1043043/101‑6 (MQ=255)                   cgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccgc                                                                                  >  2:23514/1‑94 (MQ=255)                   cgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGCCGTCCGGAgccgc                                                                                  >  2:4071001/1‑97 (MQ=255)                    ggCAATCAGCGCCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccgcc                                                                                 <  2:3808930/101‑9 (MQ=255)                    ggCAATCAGCCCCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccgcc                                                                                 <  2:3025328/101‑9 (MQ=255)                    ggCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccgcc                                                                                 <  2:3323403/101‑9 (MQ=255)                     gCAATCAGCTCCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccgccc                                                                                <  1:2916487/101‑10 (MQ=255)                     gCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccgccc                                                                                >  1:1920604/1‑92 (MQ=255)                     gCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccgccc                                                                                <  1:4564231/101‑10 (MQ=255)                      cAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccgcccg                                                                               >  2:490856/1‑91 (MQ=255)                      cAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccgcccg                                                                               <  1:4508676/101‑11 (MQ=255)                                                        cagcaTGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGAcgggg                                                       >  2:2622715/1‑99 (MQ=255)                                                        cagcaTGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGAcggcg                                                       >  1:4322975/1‑101 (MQ=255)                                                         agcaTGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGAcggcgg                                                      >  1:1356565/1‑101 (MQ=255)                                                         agcaTGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGAcggcgg                                                      >  1:3046686/1‑101 (MQ=255)                                                          gcaTGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACggcggc                                                     >  2:3209939/1‑101 (MQ=255)                                                           caTGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGgcggcg                                                    >  1:1800758/1‑101 (MQ=255)                                                            aTGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGgcggcgg                                                   >  2:3331210/1‑100 (MQ=255)                                                            aTGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGa                                                   >  1:409406/1‑101 (MQ=255)                                                            aTGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGa                                                   >  2:828237/1‑101 (MQ=255)                                                             tGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGAt                                                  >  2:4070734/1‑101 (MQ=255)                                                              ggcggcCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATg                                                 >  2:3895113/1‑101 (MQ=255)                                                               gcggcCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATgg                                                >  1:4558749/1‑101 (MQ=255)                                                                    ccccGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCg                                           >  2:1514235/1‑101 (MQ=255)                                                                    ccccGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCg                                           >  2:3755465/1‑101 (MQ=255)                                                                                          gcgcccccgcg..........cggccCCCCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCAc           <  2:3398769/91‑1 (MQ=255)                                                                                                      ggcgcggcccggcgCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCg         <  2:955117/92‑1 (MQ=255)                                                                                                      ggcgccgtccggcgCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGGACCg         >  2:2089513/10‑101 (MQ=255)                                                                                                      ggcgccgtccggcgCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCCCCg         >  1:1632221/10‑101 (MQ=255)                                                                                                      ggcgccgtccggcgCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCg         >  2:2364404/10‑101 (MQ=255)                                                                                                      ggcgccgtccggcgCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCg         >  1:4641518/10‑101 (MQ=255)                                                                                                      ggcgccgtccggcgCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCg         >  1:3122629/10‑101 (MQ=255)                                                                                                       gcgccgtccggcgCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCgg        >  2:3980874/9‑101 (MQ=255)                                                                                                         gccgtccggcgCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCgggg      >  1:2602969/7‑101 (MQ=255)                                                                                                          ccgtccggcgCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGCCGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCCACggggc     >  2:2824469/6‑100 (MQ=38)                                                                                                          ccgtccggcgCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCGGGGt     >  1:3038383/6‑101 (MQ=255)                                                                                                          ccgtccggcgCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCGGGGt     >  1:2012467/6‑101 (MQ=255)                                                                                                            gtccggcgCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCGGGGGCa   >  2:125101/4‑101 (MQ=255)                                                                                                             tccggcgCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCGGGGTCAg  >  2:1559584/3‑101 (MQ=255)                                                                                                               |                                                                                                   TCGCCGTCGCGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCGGGGTCAG  >  NC_014034/3214684‑3214882 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG