Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_014034 774,585 C→G 47.4% intergenic (‑39/+81) oppB1 ← / ← oppA1 oligopeptide ABC transporter permease OppB/oligopeptide ABC transporter periplasmic oligopeptide‑binding protein OppA

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_014034774,5850C→G47.4% 13.8 0.0 ‑0.619intergenic (‑39/+81)oppB1/oppA1oligopeptide ABC transporter permease OppB/oligopeptide ABC transporter periplasmic oligopeptide‑binding protein OppA
Reads supporting (aligned to +/- strand):  new base (0/9):  ref base (1/9):  total (1/18)
Fisher's exact test strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 2.80e-01

AGAGAAATGATCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCGGGGGGGCGCCGGGCCGCAGCGCCCCCC  >  NC_014034/774485‑774613
                                                                                                    |                            
agagAAATGATCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGc                              <  2:3459518/101‑1 (MQ=255)
agagAAATGATCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGc                              <  2:3632671/101‑1 (MQ=255)
 gagaAATGATCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCg                             <  2:3740429/101‑1 (MQ=255)
    aaaTGATCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCgggg                          <  2:1940760/101‑1 (MQ=255)
      atgacaaGAGGCGGCGGGACGGAAATCAGAAAGCGTCGAATGTTATACGGGAACATCGGCGCCTCGCCTCGTCTCTTTTTCCTTGGGGGGGTGGCgggggg                        <  2:432281/95‑1 (MQ=255)
      aTGATCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGGGGCgggggg                        >  1:1588958/1‑101 (MQ=255)
        gATCAGAGGCGTCGGGATCGCAATCAGGAACCGCCGCATCATTTGCTGGAACGTCGGCCCCTCGTCTCTTCTCTCTTTCCTTCGGGGGGTGGCggggggcc                      <  2:1520148/101‑3 (MQ=255)
          tCAGAAGCGTCGGGATCGAAATCAGCAATCGTCGCATCGTATACGGGAACATCGGCGCCTCGGCTCGTCTCTTTTTCCTTCGGGGGGTGGCGGGGGGgcgc                    <  2:1366494/101‑1 (MQ=255)
          tCAGAAGCGTCGGGATCCCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCGGGGGGgcgc                    <  1:1254424/101‑1 (MQ=255)
           caaaaGCGTCGGGATCGAAACCAGCAATCGTCCCATCGTATCCTGAACCATCGGCGCCTCGGCTCGTCTCTTTTCCCTGGGGGGGGGGGGGGGGGGGCGcc                   <  2:3907286/98‑1 (MQ=255)
           cAGAAGCGGGGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCGCGGCTCGTCTCTCTTTCCTTGGGGGGGTGGCGGGGGGGCGcc                   <  2:3295558/101‑1 (MQ=255)
           aaaaggCGTGGGGATCGCAATCAGCAATCGTCGCTTCTTATACTGGACCGCCGGCGCCTCGCCTCTTCTCTCTTTCCTGGGGGGGGGGGGGGGGGGGCGcc                   <  2:3928989/96‑1 (MQ=255)
            aGAAGCGTCGGGATCGCAAGCAGCAATCGTCTCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCGGGGGGGCGCCg                  <  2:4366383/101‑1 (MQ=255)
                 tgacGGGATCCCAACCACCAATCGCCGCATCGTAAACAACAACATCGGCGCCCCGTCTCATCACTCTTTCCTCCGGGGGGTGGCGGGGGGGCGCCGGGCCg             <  2:1440705/98‑1 (MQ=255)
                        accGCAATCAGCATTCGTCCCATCTTATCCGGGAACATCGGCGCCTCGGCTCGTCTTTCTTTCCTGGGGGGGGGGGGGGGGGGGCGCCGGGCCGCAggccc      <  2:3329115/99‑5 (MQ=255)
                         tCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGGGGGGGGGCGCCGGGCCGCAggcccg     <  2:577513/101‑6 (MQ=255)
                         tCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCGGGGGGGCGCCGGGCCGCAggcccg     <  2:2914125/101‑6 (MQ=255)
                         tCGCAATCAGCAATCGCCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTGCGGGGGGTGGGGGGGGGGCGCCGGGCCGCAggcccg     <  2:2026651/101‑6 (MQ=255)
                         ccccAACCAGCATCCGCCCCATCGTATACTGAAGCGCCGGCGCCTCGGCTCCCCTCTTTTCCCTGGGGGGGGGGGGGGGGGGGCGCCGGGCCGCAggcccg     <  2:1588853/98‑6 (MQ=255)
                           gCAATCAGCAATCGTCGCATCGTATACTGGACCATCGGCGCCTCGGCTCGTCTCTCTTTCCTTGGGGGGGTGGGGGGGGGGCGCCGGGCCGCAggcccggc   <  1:2222798/101‑8 (MQ=255)
                            cAATCAGCAATCGTCCCATCGTATACTGGAACACCGGCGCCCCGGCTCGTCTCTCTTTCCTTGGGGGGGTGGGGGGGGGGCGCCGGGCCGCAggcccggcg  <  1:244907/101‑9 (MQ=255)
                            cAATCAGCAATCGTCCCATCGTATACGGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTGGGGGGGTGGGGGGGGGGCGCCGGGCCGCAggcccggcg  <  1:3538121/101‑9 (MQ=255)
                                                                                                    |                            
AGAGAAATGATCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCGGGGGGGCGCCGGGCCGCAGCGCCCCCC  >  NC_014034/774485‑774613

Base quality scores:  ATCG  < 3 ≤  ATCG  < 7 ≤  ATCG  < 16 ≤  ATCG  < 27 ≤  ATCG  < 39 ≤  ATCG