Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_014034 | 774,585 | C→G | 47.4% | intergenic (‑39/+81) | oppB1 ← / ← oppA1 | oligopeptide ABC transporter permease OppB/oligopeptide ABC transporter periplasmic oligopeptide‑binding protein OppA |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | NC_014034 | 774,585 | 0 | C→G | 47.4% | 13.8 0.0 ‑0.6 | 19 | intergenic (‑39/+81) | oppB1/oppA1 | oligopeptide ABC transporter permease OppB/oligopeptide ABC transporter periplasmic oligopeptide‑binding protein OppA |
Reads supporting (aligned to +/- strand): new base (0/9): ref base (1/9): total (1/18) | ||||||||||
Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 2.80e-01 |
AGAGAAATGATCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCGGGGGGGCGCCGGGCCGCAGCGCCCCCC > NC_014034/774485‑774613
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agagAAATGATCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGc < 2:3459518/101‑1 (MQ=255)
agagAAATGATCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGc < 2:3632671/101‑1 (MQ=255)
gagaAATGATCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCg < 2:3740429/101‑1 (MQ=255)
aaaTGATCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCgggg < 2:1940760/101‑1 (MQ=255)
atgacaaGAGGCGGCGGGACGGAAATCAGAAAGCGTCGAATGTTATACGGGAACATCGGCGCCTCGCCTCGTCTCTTTTTCCTTGGGGGGGTGGCgggggg < 2:432281/95‑1 (MQ=255)
aTGATCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGGGGCgggggg > 1:1588958/1‑101 (MQ=255)
gATCAGAGGCGTCGGGATCGCAATCAGGAACCGCCGCATCATTTGCTGGAACGTCGGCCCCTCGTCTCTTCTCTCTTTCCTTCGGGGGGTGGCggggggcc < 2:1520148/101‑3 (MQ=255)
tCAGAAGCGTCGGGATCGAAATCAGCAATCGTCGCATCGTATACGGGAACATCGGCGCCTCGGCTCGTCTCTTTTTCCTTCGGGGGGTGGCGGGGGGgcgc < 2:1366494/101‑1 (MQ=255)
tCAGAAGCGTCGGGATCCCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCGGGGGGgcgc < 1:1254424/101‑1 (MQ=255)
caaaaGCGTCGGGATCGAAACCAGCAATCGTCCCATCGTATCCTGAACCATCGGCGCCTCGGCTCGTCTCTTTTCCCTGGGGGGGGGGGGGGGGGGGCGcc < 2:3907286/98‑1 (MQ=255)
cAGAAGCGGGGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCGCGGCTCGTCTCTCTTTCCTTGGGGGGGTGGCGGGGGGGCGcc < 2:3295558/101‑1 (MQ=255)
aaaaggCGTGGGGATCGCAATCAGCAATCGTCGCTTCTTATACTGGACCGCCGGCGCCTCGCCTCTTCTCTCTTTCCTGGGGGGGGGGGGGGGGGGGCGcc < 2:3928989/96‑1 (MQ=255)
aGAAGCGTCGGGATCGCAAGCAGCAATCGTCTCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCGGGGGGGCGCCg < 2:4366383/101‑1 (MQ=255)
tgacGGGATCCCAACCACCAATCGCCGCATCGTAAACAACAACATCGGCGCCCCGTCTCATCACTCTTTCCTCCGGGGGGTGGCGGGGGGGCGCCGGGCCg < 2:1440705/98‑1 (MQ=255)
accGCAATCAGCATTCGTCCCATCTTATCCGGGAACATCGGCGCCTCGGCTCGTCTTTCTTTCCTGGGGGGGGGGGGGGGGGGGCGCCGGGCCGCAggccc < 2:3329115/99‑5 (MQ=255)
tCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGGGGGGGGGCGCCGGGCCGCAggcccg < 2:577513/101‑6 (MQ=255)
tCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCGGGGGGGCGCCGGGCCGCAggcccg < 2:2914125/101‑6 (MQ=255)
tCGCAATCAGCAATCGCCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTGCGGGGGGTGGGGGGGGGGCGCCGGGCCGCAggcccg < 2:2026651/101‑6 (MQ=255)
ccccAACCAGCATCCGCCCCATCGTATACTGAAGCGCCGGCGCCTCGGCTCCCCTCTTTTCCCTGGGGGGGGGGGGGGGGGGGCGCCGGGCCGCAggcccg < 2:1588853/98‑6 (MQ=255)
gCAATCAGCAATCGTCGCATCGTATACTGGACCATCGGCGCCTCGGCTCGTCTCTCTTTCCTTGGGGGGGTGGGGGGGGGGCGCCGGGCCGCAggcccggc < 1:2222798/101‑8 (MQ=255)
cAATCAGCAATCGTCCCATCGTATACTGGAACACCGGCGCCCCGGCTCGTCTCTCTTTCCTTGGGGGGGTGGGGGGGGGGCGCCGGGCCGCAggcccggcg < 1:244907/101‑9 (MQ=255)
cAATCAGCAATCGTCCCATCGTATACGGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTGGGGGGGTGGGGGGGGGGCGCCGGGCCGCAggcccggcg < 1:3538121/101‑9 (MQ=255)
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AGAGAAATGATCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCGGGGGGGCGCCGGGCCGCAGCGCCCCCC > NC_014034/774485‑774613
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 16 ≤
ATCG
< 27 ≤
ATCG
< 39 ≤
ATCG
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