| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,732,702 | +G | 91.7% | intergenic (‑126/‑277) | RCAP_rcc01601 ← / → tgt | FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,732,702 | 2 | .→G | 91.7% | 3.2 ‑2.5 ‑2.0 | 36 | intergenic (‑126/‑277) | RCAP_rcc01601/tgt | FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase |
| Reads supporting (aligned to +/- strand): new base (0/33): ref base (1/2): total (1/35) | ||||||||||
| Fisher's exact test strand distribution p-value = 8.33e-02 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.06e-02 | ||||||||||
TATATAGGGTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.A.CCGGGC..GGGCG..G..G..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCC > NC_014034/1732604‑1732780
|
tatataGGGTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCGG.C.Ccgggc..g > 2:1975609/1‑101 (MQ=255)
atataGGGTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.C.Cccggg..ggg > 1:3309749/1‑101 (MQ=255)
tataGGGTATCGGGGGGAGAGGTAAAGTCCGTCTGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCcgggc..ggg < 1:1246910/101‑1 (MQ=255)
ataGGGTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCcgggc..gggg < 1:3068853/101‑2 (MQ=255)
taGGGTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GCC.Ccgggc..ggggg < 1:2416650/101‑3 (MQ=255)
aGGGTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCcgggc..gggggc < 2:29253/101‑4 (MQ=255)
ggTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCcgggc..gggggctc < 2:2125867/101‑6 (MQ=255)
ggTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCcgggc..gggggctc < 2:1343894/101‑6 (MQ=255)
gTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGGCGCGGC.G.G.CCCCGG..GGGGg..g..g..ggg > 1:3211375/1‑99 (MQ=255)
tATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCcgggc..gggggctccg < 1:3123120/101‑8 (MQ=39)
aTCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCGG.C.CCGGGC..GGGGg..g..g..gggc > 1:3565799/1‑98 (MQ=255)
aTCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.A.CC.CGC..GGCCg..g..g..gggacc > 2:3482098/1‑96 (MQ=255)
tCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.A.CCCGGG..GGGGg..g..g..gggccc > 2:3258430/1‑96 (MQ=255)
cGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.A.Cccggg..ggggg..g..gcgggcac > 2:4404700/1‑94 (MQ=255)
ggggggAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGG..GGGGG..G..G..Gcgcccc > 1:2144327/1‑100 (MQ=255)
gagGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.AGCCGGGC..CGGGG..G..G..GCGCCGGCCccccc > 2:3598854/1‑101 (MQ=255)
agGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGC..GGGGG..G..G..GCGCCCCCCcccccc > 1:1317387/1‑100 (MQ=255)
ggTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCAccccc < 2:4112580/101‑1 (MQ=25)
gTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCg < 2:4150718/101‑1 (MQ=25)
gTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCg < 1:1866188/101‑1 (MQ=25)
tAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCgg < 2:2123651/101‑1 (MQ=25)
tAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGC..AGG.G..G..G..CCCCCCGCCccggctcccc > 2:2207937/1‑93 (MQ=255)
aaaGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGG..GGGGG..G..G..GCCCCCCCCcccccccccc > 2:2846371/1‑96 (MQ=255)
aaaGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGC..GGGGGATC..C..GCCCCCGCACCCCCGGc < 1:3049891/101‑1 (MQ=37)
aaaGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGC..GGGGG..G..G..CCGCCCCCCcccccccccc > 2:452225/1‑96 (MQ=255)
aaGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCg < 1:2230478/101‑1 (MQ=25)
aGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGt < 2:2039214/101‑1 (MQ=25)
ggCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTa < 1:4291833/101‑1 (MQ=25)
gCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTAt < 1:2822342/101‑1 (MQ=25)
cGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTAttt < 2:2197933/101‑1 (MQ=25)
tGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCa < 1:3599102/101‑1 (MQ=21)
ggggCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCaaga < 2:4033100/101‑1 (MQ=21)
gggCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCaagaa < 2:937029/101‑1 (MQ=21)
ggCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCaagaag < 2:2109448/101‑1 (MQ=18)
ggCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCaagaag < 2:1852620/101‑1 (MQ=18)
cGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAgaagaa < 1:2161466/101‑1 (MQ=18)
ggAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGaaa < 2:1299150/101‑1 (MQ=18)
gAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAAc < 2:2078712/101‑1 (MQ=18)
aaGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACaa < 1:3469757/101‑1 (MQ=18)
aaGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACaa < 1:3918651/101‑1 (MQ=18)
aaGCCGCGTGACAAGCAGGGTTTCGCCGCGGCGGGGCAGCGGC.G.ACCCGGGCAGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACaa < 2:1058920/101‑1 (MQ=18)
gCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGc < 1:3525803/101‑1 (MQ=18)
gCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGc < 2:463680/101‑1 (MQ=18)
gTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGAc < 2:3214114/101‑1 (MQ=18)
tGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGAcc < 1:2781204/101‑1 (MQ=18)
gCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCa < 1:3881522/101‑1 (MQ=18)
gggTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGcccccc < 2:2977817/101‑1 (MQ=18)
ggTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCt < 2:3015952/101‑1 (MQ=18)
ggTTTCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCt < 2:2144188/101‑1 (MQ=18)
tttCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGc < 2:1831561/101‑1 (MQ=18)
ttCGCCGCGGCGGGGCCGCGGC.G.ACCCGGGC..GGGGT..GTCC..GCCGCCACGCCCCTGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCa < 2:3696035/101‑1 (MQ=25)
ctccccgcTGCGGGGCCGCCGC.G.ACCCGGGCGGGGGCC..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCa < 2:2006285/97‑1 (MQ=21)
gccgcGGCGGGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGcc < 2:667191/101‑1 (MQ=18)
gcggggGGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCa < 2:1317290/101‑1 (MQ=18)
cggcggGGCCGCGGC.G.ACCCGGGG..GGGGG..G..GCCGCCCCCCCCCCCCCCGCGGATTTTCGCCCAGAAGAAACAAACGGGGCCAAGCCCCCCCCCACCCGccg > 2:2082861/1‑99 (MQ=255)
ggcggGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATg < 1:3258662/101‑1 (MQ=18)
cggGGCCGCGGC.G.ACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGcc < 1:298500/101‑1 (MQ=18)
|
TATATAGGGTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.G.A.CCGGGC..GGGCG..G..G..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCC > NC_014034/1732604‑1732780
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 23 ≤
ATCG
< 31 ≤
ATCG
< 38 ≤
ATCG
|