New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1036263209 (0.980)2 (0.010) 2/188 23.9 0.01 coding (393/705 nt) RCAP_rcc00942 hypothetical protein
?NC_014035 42485 = 114 (0.870)coding (868/1044 nt) RCAP_rcp00059 type 12 family methyltransferase
Rejected: Position hash score below cutoff.

GACATGGCGGCGGGCTTTCGGCCATGCGGCGGCAAGGCCACGGGCGAGGACGCCGGACCCGGCGGCGCACCAGACCTCTTCGGGGTCAAAGGCTGCCAGACGGGCA....................................................................................................  >  NC_014034/1036158‑1036263
....................................................................................................CGGGCATCAGACGGCCGATCACATGTTCCTCGGGGGCGCAGCGTCCCTCGGTCAGCGTGGCATGCAGCGAGACGAACACCCCCCGAGGCGACAGCCGCTCGGCGAT  >  NC_014035/42485‑42584
                                                                                                                                                                                                              
                                  AGGCCACGGGCGAGGACGCCGGACCCGGCGGCGCACCAGACCTCTTCGGGGTCAAAGGCTGCCAGACGGGCATCAGACGGCCGATCACATGTTCCTCGGGG                                                                         >  1:4377066/1‑101 (MQ=255)
                                                                  GCACCAGACCTCTTCGGGGTCAAAGGCTGCCAGACGGGCATCAGACGGCCGATCACATGTTCCTCGGGGGCGCAGCGTCCCTCGGTCAGCGTGGCATGCAG                                         <  2:4376795/101‑1 (MQ=255)
                                                                                                                                                                                                              
GACATGGCGGCGGGCTTTCGGCCATGCGGCGGCAAGGCCACGGGCGAGGACGCCGGACCCGGCGGCGCACCAGACCTCTTCGGGGTCAAAGGCTGCCAGACGGGCA....................................................................................................  >  NC_014034/1036158‑1036263
....................................................................................................CGGGCATCAGACGGCCGATCACATGTTCCTCGGGGGCGCAGCGTCCCTCGGTCAGCGTGGCATGCAGCGAGACGAACACCCCCCGAGGCGACAGCCGCTCGGCGAT  >  NC_014035/42485‑42584

Base quality scores:  ATCG  < 3 ≤  ATCG  < 27 ≤  ATCG  < 31 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG