New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1065057	197 (0.950)	3 (0.020)	3/184	22.5	0.02	coding (555/3084 nt)	RCAP_rcc00968	hypothetical protein
	?	NC_014035	99474 =	131 (1.000)					intergenic (+21/‑203)	repB/repC	plasmid partitioning protein RepB/plasmid replication protein RepC
Rejected: Position hash score below cutoff.

TTCTCGCCGGAGTCCATGAACCATTGCACGGCGGCCGTGCCGAAGCCGATCACTGCCATGGTGGCGAGCGACATCGGGTTGAGCATCCCCATGAAGGAGGCCCGCAGC....................................................................................................  >  NC_014034/1064950‑1065057 ....................................................................................................CCCGCAGCAGAAAGGAGCACGAAAGCAACCCGAAAAGAAAGAGCCCCCCAAGGTCATCCCCGGAGAGCCCCCATCTGTTCTTTGCACCTTCAGATGTATCAGCTTCTC  >  NC_014035/99474‑99573                                                                                                                                                                                                                                                                 GATCACTGCCATGGTGGCGAGCGACATCGGGTTGAGCATCCCCATGAAGGAGGCCCGCAGCAGAAAGGAGCACGAAAGCAACCCGAAAAGAAAGAGCCCCC                                                              >  1:540921/1‑101 (MQ=255)                                                              TGGCGAGCGACATCGGTTTGAGCATCCCCATGAAGGAGGCCCGCAGCAGAAAGGAGCACGAAAGCAACCCGAAAAGAAAGAGCCCCCCAAGGTCATCCCCG                                                <  2:540869/101‑1 (MQ=255)                                                                                                 gccGCCCGCAGCAGAAAGGAGCACGAAAGCAACCCGAAAAGAAAGAGCCCCCCAAGGTCATCCCCGGAGAGCCCCCATCTGTTCTTTGCACCTTCAGATGT             <  2:1239626/98‑1 (MQ=255)                                                                                                                                                                                                                  TTCTCGCCGGAGTCCATGAACCATTGCACGGCGGCCGTGCCGAAGCCGATCACTGCCATGGTGGCGAGCGACATCGGGTTGAGCATCCCCATGAAGGAGGCCCGCAGC....................................................................................................  >  NC_014034/1064950‑1065057 ....................................................................................................CCCGCAGCAGAAAGGAGCACGAAAGCAACCCGAAAAGAAAGAGCCCCCCAAGGTCATCCCCGGAGAGCCCCCATCTGTTCTTTGCACCTTCAGATGTATCAGCTTCTC  >  NC_014035/99474‑99573 Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 23 ≤  ATCG  < 31 ≤  ATCG  < 38 ≤  ATCG