New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1091537239 (1.080)3 (0.010) 3/196 34.6 0.01 coding (336/612 nt) RCAP_rcc01011 S24 family peptidase
?NC_014034 1993615 = 238 (1.050)coding (1412/2391 nt) glgP phosphorylase
Rejected: Position hash score below cutoff.

GGGTCGGGCATGGTGCCCGCCTCAGAACAGGCCGACGGCGTGGTCGCCTTCACCCGCCGTTTCCTCGCCAACCAGGGCGCAAGACCGGATCACTGCTCGGTC....................................................................................................  >  NC_014034/1091436‑1091537
....................................................................................................TCGCCCCGGTAATCAACCGCGACAGCGCCGGGTTGGCCATGCGCAACCAGCGCCGCGGCGTCACCCCGTTGGTCTGGTTGATGATCCGCCCGGGATGCAGCT  >  NC_014034/1993615‑1993714
                                                                                                                                                                                                          
                                                                   tCAACNAGGGCGCAAGACCGGATCACTGCTCGGTCGCCCCGGTAATCAACCGCGACAGCGCCGGGTTGGCCATGCGCAACCAGCGCCGCGGCGTCACCCCG                                    <  1:1112902/100‑1 (MQ=255)
                                                                    CAACCAGGGCGCAAGACCGGATCACTGCTCGGTCGCCCCGGTAATCAACCGCGACAGCGCCGGGTTGGCCATGCGCAACCAGCNCCGCGGCGTCCNCCnna                                   >  2:1112811/1‑98 (MQ=255)
                                                                                                   GTCGCCCCGGTAATCCACCGCGACAGCGCCGGGTTGGCCATGCACAACCAGCGCCGCGGCGTCACCCCGTTGGTCTGGTTGATGATCCGCCCGGGATGCAG    <  2:1052293/101‑1 (MQ=255)
                                                                                                                                                                                                          
GGGTCGGGCATGGTGCCCGCCTCAGAACAGGCCGACGGCGTGGTCGCCTTCACCCGCCGTTTCCTCGCCAACCAGGGCGCAAGACCGGATCACTGCTCGGTC....................................................................................................  >  NC_014034/1091436‑1091537
....................................................................................................TCGCCCCGGTAATCAACCGCGACAGCGCCGGGTTGGCCATGCGCAACCAGCGCCGCGGCGTCACCCCGTTGGTCTGGTTGATGATCCGCCCGGGATGCAGCT  >  NC_014034/1993615‑1993714

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG