New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1096663193 (0.950)2 (0.010) 2/180 34.3 0.01 coding (711/954 nt) RCAP_rcc01019 PHP domain‑containing protein
?NC_014034 2240741 = 183 (0.810)coding (1790/2040 nt) RCAP_rcc02074 ferredoxin domain‑containing protein
Rejected: Position hash score below cutoff.

GCGGCTGGGTGATGGTGAAAGCGCCCGAAAACACCCCCGAGGCGCTGCTGGCGGCGCTGAAGGCGGGGCATTTCTATGCCTCGCAGGGGCCCGAGTTGCACGCCATCCGC.................................................................................................  >  NC_014034/1096554‑1096663
....................................................................................................CGCCATCCGCGCCCCGGTCCCGGCCGCATTGCCCGCCGAGCTGACCGCCTCCAGCGCCACATCGGGGATCATCCCCAGCACCATCGCATGTTTCGGACTGATATGGG  >  NC_014034/2240741‑2240837
                                                                                                                                                                                                               
                                                                         CTATGCCTCGCAGGGGCCCGAGTTGCACGCCATCCGCGCCCCGGTCCCGGCCGCATTGCCCGCCGAGCTGACCGCCTCCAGCGCCACATCGGGGATCATCC                                   >  2:3299994/1‑101 (MQ=255)
                                                                            TGCCTCGCAGGGGCCCGAGTTGCACGCCATCCGCGCCCCGGTCCCGGCCGCATTGCCCGCCGAGCTGACCGCCTCCAGCGCCACATCGGGGATCATCCCCA                                <  1:3300226/101‑1 (MQ=255)
                                                                                                                                                                                                               
GCGGCTGGGTGATGGTGAAAGCGCCCGAAAACACCCCCGAGGCGCTGCTGGCGGCGCTGAAGGCGGGGCATTTCTATGCCTCGCAGGGGCCCGAGTTGCACGCCATCCGC.................................................................................................  >  NC_014034/1096554‑1096663
....................................................................................................CGCCATCCGCGCCCCGGTCCCGGCCGCATTGCCCGCCGAGCTGACCGCCTCCAGCGCCACATCGGGGATCATCCCCAGCACCATCGCATGTTTCGGACTGATATGGG  >  NC_014034/2240741‑2240837

Base quality scores:  ATCG  < 3 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG