New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1228355 =229 (1.130)2 (0.010) 2/180 34.3 0.01 coding (52/729 nt) ccoO cbb3‑type cytochrome c oxidase subunit II
?NC_014034 2038738 = 222 (0.980)coding (15/1215 nt) icd isocitrate dehydrogenase
Rejected: Position hash score below cutoff.

GGGGTGTAGGGACGCATCCCCTCGACCTTCTCGATGGTGTTTTCCAGATAGAACAGCGGCGCGATTTCCACGATGCCGCCGATGGTGACGACGAGGAAGGCGAAGATCAA..................................................................................................  <  NC_014034/1228464‑1228355
....................................................................................................CGAAGATCAAGGTAGCGAATCCCATCGTCGAGATGGACGGCGACGAGATGACCCGGATCATCTGGGATTTCATCAAGAAAAAGCTGATCCTGCCCTATCTTGACGTCG  >  NC_014034/2038738‑2038835
                                                                                                                                                                                                                
                                           CCAGATAGAACAGCGGCGCGATTTCCACGATGCCGCCGATGGTGACGACGAGGAAGGCGAAGATCAAGGTAGCGAATCCCATCGTCGAGATGGACGGCGAC                                                                  >  2:1500957/1‑101 (MQ=255)
                                                                        ATGCCGCCGATGGTGACGACGAGGAAGGCGAAGATCAAGGTAGCGAATCCCATCGTCGAGATGGACGGCGACGAGATGACCCGGATCATCTGGGATTTCAT                                     <  1:1501062/101‑1 (MQ=255)
                                                                                                                                                                                                                
GGGGTGTAGGGACGCATCCCCTCGACCTTCTCGATGGTGTTTTCCAGATAGAACAGCGGCGCGATTTCCACGATGCCGCCGATGGTGACGACGAGGAAGGCGAAGATCAA..................................................................................................  <  NC_014034/1228464‑1228355
....................................................................................................CGAAGATCAAGGTAGCGAATCCCATCGTCGAGATGGACGGCGACGAGATGACCCGGATCATCTGGGATTTCATCAAGAAAAAGCTGATCCTGCCCTATCTTGACGTCG  >  NC_014034/2038738‑2038835

Base quality scores:  ATCG  < 3 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG