New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1266310219 (1.050)2 (0.010) 2/184 34.7 0.01 coding (39/447 nt) phnG phosphonate metabolism protein PhnG
?NC_014034 = 2919408 155 (0.690)coding (553/786 nt) RCAP_rcc02729 hypothetical protein
Rejected: Position hash score below cutoff.

CACTGGCCGAATCCGCGGCGGCGCCGCAATATTTGTCTAGTTGTATATTAATCTGGACAAATCCGCAAGATGTCTGGTCTGACCGAAACCACCACGACCCGCGCGGCG....................................................................................................  >  NC_014034/1266203‑1266310
....................................................................................................GCGCGGCGGAGCATTGACGGGCTCCGGAGGCACGGTCTCGCCGCGCATGATGGCGGCATGGTGCGGCTCGTCGGGCAGAACGACGTTGGCGATGCGGTTCTGGTCGCG  <  NC_014034/2919408‑2919309
                                                                                                                                                                                                                
                               TTTGTCTAGTTGTATATTAATCTGGACAAATCCGCAAGATGTCTGGTCTGACCGAAACCACCACGACCCGCGCGGCGGAGCATTGACGGGCTCCGGAGGCA                                                                              >  1:611009/1‑101 (MQ=255)
                                      AGTTGTATATTAATCTGGACAAATCCGCAAGATGTCTGGTCTGACCGAAACCACCACGACCCGCGCGGCGGAGCATTGACGGGCTCCGGAGGCACGGTCTC                                                                       <  2:610941/101‑1 (MQ=255)
                                                                                                                                                                                                                
CACTGGCCGAATCCGCGGCGGCGCCGCAATATTTGTCTAGTTGTATATTAATCTGGACAAATCCGCAAGATGTCTGGTCTGACCGAAACCACCACGACCCGCGCGGCG....................................................................................................  >  NC_014034/1266203‑1266310
....................................................................................................GCGCGGCGGAGCATTGACGGGCTCCGGAGGCACGGTCTCGCCGCGCATGATGGCGGCATGGTGCGGCTCGTCGGGCAGAACGACGTTGGCGATGCGGTTCTGGTCGCG  <  NC_014034/2919408‑2919309

Base quality scores:  ATCG  < 3 ≤  ATCG  < 30 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG