New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1267179199 (0.980)2 (0.010) 2/180 34.3 0.01 coding (459/567 nt) phnH phosphonate metabolism protein PhnH
?NC_014034 1989702 = 217 (0.960)coding (737/1272 nt) glgC glucose‑1‑phosphate adenylyltransferase
Rejected: Position hash score below cutoff.

ACCGCTCGGTGACGCTGATCGTCGAGATGGCGGCGCTGACGCCGCCCAATGCCCGGCTGCGCGGCCCGGGGATCGCAACGCATCAGGATGCGGCCCTGCCCGCCATCGCC....................................................................................................  >  NC_014034/1267070‑1267179
....................................................................................................CGCCATCGCCTTGCCATATTTCACGATCTGCGGGATCAGGTCGTGACCGAAATCATGGCTGGAATGGGGATCCTCGGCATCGCGGATCAGCAACTCGCGCAGGAACACCC  >  NC_014034/1989702‑1989801
                                                                                                                                                                                                                  
                                     GACGCCGCCCAATGCCCGGCTGCGCGGCCCGGGGATCGCAACGCATCAGGATGCGGCCCTGCCCGCCATCGCCTTGCCATATTTCACGATCTGCGGGATCA                                                                          >  1:2949358/1‑101 (MQ=255)
                                                ATGCCCGGCTGCGCGGCCCGGGGATCGCAACGCATCAGGATGCGGCCCTGCCCGCCATCGCCTTGCCATATTTCACGATCTGCGGGATCAGGTCGTGACCG                                                               <  2:2949137/101‑1 (MQ=255)
                                                                                                                                                                                                                  
ACCGCTCGGTGACGCTGATCGTCGAGATGGCGGCGCTGACGCCGCCCAATGCCCGGCTGCGCGGCCCGGGGATCGCAACGCATCAGGATGCGGCCCTGCCCGCCATCGCC....................................................................................................  >  NC_014034/1267070‑1267179
....................................................................................................CGCCATCGCCTTGCCATATTTCACGATCTGCGGGATCAGGTCGTGACCGAAATCATGGCTGGAATGGGGATCCTCGGCATCGCGGATCAGCAACTCGCGCAGGAACACCC  >  NC_014034/1989702‑1989801

Base quality scores:  ATCG  < 3 ≤  ATCG  < 27 ≤  ATCG  < 31 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG