New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1267690197 (0.900)2 (0.010) 2/194 35.6 0.01 coding (404/1074 nt) phnI phosphonate metabolism protein PhnI
?NC_014034 = 1267712 188 (0.830)coding (426/1074 nt) phnI phosphonate metabolism protein PhnI
Rejected: Position hash score below cutoff.

TTTCGCGCCGGATTTCCGCCACTTTCAAGGATGTGCCGGGCGGGCAGCTGCTGGGGCCGACCTTCGATTACACGCATCGGCTGCTGGATTTCGCGCTTTTGGC....................................................................................................  >  NC_014034/1267588‑1267690
....................................................................................................GGCGGCGGGCGGCACCTCCCCCTCGGCCAAAAGCGCGAAATCCAGCAGCCGATGCGTGTAATCGAAGGTCGGCCCCAGCAGCTGCCCGCCCGGCACATCCTTG  <  NC_014034/1267712‑1267613
                                                                                                                                                                                                           
                                                                   TTACACGCATCGGCTGCTGGATTTCGCGCTTTTGGCGGCGGGCGGCACCTCCCCCCCGGCCAAAAACGCGAAATCCAGCAGCCGATGCGGGTAATCGAAGG                                     >  2:3208304/1‑101 (MQ=255)
                                                                             CGGCTGCTGGATTTCGCGCTTTTGGCGGCGGGCGGCCCCCCCCCCTCGGCCAAAAGCGCGAAATCCAGCAGCCGATGCGTGTAATCGAAGGTCGGCCCCAG                           <  1:3208533/101‑1 (MQ=255)
                                                                                                                                                                                                           
TTTCGCGCCGGATTTCCGCCACTTTCAAGGATGTGCCGGGCGGGCAGCTGCTGGGGCCGACCTTCGATTACACGCATCGGCTGCTGGATTTCGCGCTTTTGGC....................................................................................................  >  NC_014034/1267588‑1267690
....................................................................................................GGCGGCGGGCGGCACCTCCCCCTCGGCCAAAAGCGCGAAATCCAGCAGCCGATGCGTGTAATCGAAGGTCGGCCCCAGCAGCTGCCCGCCCGGCACATCCTTG  <  NC_014034/1267712‑1267613

Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 20 ≤  ATCG  < 30 ≤  ATCG  < 41 ≤  ATCG