New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1303934 =	96 (0.450)	40 (0.190)	11/188	26.8	0.23	intergenic (+121/+36)	urtE/RCAP_rcc01231	urea ABC transporter ATP‑binding protein UrtE/UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
	?	NC_014034	= 1478641	167 (0.740)					intergenic (+129/+14)	RCAP_rcc01372/RCAP_rcc01373	ABC transporter ATP‑binding protein/RpiR family transcriptional regulator
Rejected: Position hash score below cutoff.

GCTCGGCGCGCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGG....................................................................................................  <  NC_014034/1304039‑1303934 ....................................................................................................AGGGGGCGCTG.CCCCCTCTTGCCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATAT  <  NC_014034/1478641‑1478543                                                                                                                                                                                                                      CGCGCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGC                                                                                                     >  1:2677417/1‑101 (MQ=1)        ggctTTTATGCTTTAAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCG                                                                                                    <  2:4376378/97‑1 (MQ=0)        GCGCTTTTTGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCc                                                                                                    <  1:2888679/101‑2 (MQ=1)        GCGCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCG                                                                                                    <  1:168512/101‑1 (MQ=1)          GCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAATGGGGCGCT                                                                                                  <  2:1067930/101‑1 (MQ=1)          GCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCg                                                                                                  >  2:675838/1‑100 (MQ=1)          GCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCT                                                                                                  <  1:2925052/101‑1 (MQ=1)           tTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTG                                                                                                 <  1:1431979/100‑1 (MQ=1)           CTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTG                                                                                                 >  1:3462694/1‑101 (MQ=1)            TTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGa                                                                                                >  2:1431872/1‑100 (MQ=1)            TTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTG.C                                                                                               >  1:4361366/1‑101 (MQ=1)             TTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTG.CC                                                                                              >  1:1963153/1‑101 (MQ=1)             TTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTG.CC                                                                                              >  1:702705/1‑101 (MQ=1)               tTGCGTTCAAGCCGGTGCGCAAGCCCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTG.CCCC                                                                                            <  2:3696092/100‑1 (MQ=1)               ATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCCG.CCCC                                                                                            >  1:75734/1‑101 (MQ=1)                TGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTG.CCCCC                                                                                           >  1:582575/1‑101 (MQ=1)                 GCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTG.CCCCCc                                                                                          <  1:4355531/101‑2 (MQ=1)                 GCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTG.CCCCCc                                                                                          >  1:4112775/1‑100 (MQ=1)                 GCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTG.CCCCCc                                                                                          <  1:640906/101‑2 (MQ=1)                  gGTTAAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTG.CCCCCct                                                                                         <  2:3386869/100‑3 (MQ=1)                  CGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTG.CCCCCct                                                                                         >  1:2113536/1‑99 (MQ=1)                  CGTTAAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTG.CCCCCct                                                                                         <  1:1373840/101‑3 (MQ=1)                   GTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTG.CCCCCctc                                                                                        >  1:4440207/1‑98 (MQ=1)                   GTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTG.CCCCCctc                                                                                        >  2:3941111/1‑98 (MQ=1)                    TTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTG.CCCCCctct                                                                                       <  2:545706/101‑5 (MQ=1)                     TCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTG.CCCCCctctt                                                                                      <  2:2187415/101‑6 (MQ=1)                     TCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTG.CCCCCctctt                                                                                      <  2:3482867/101‑6 (MQ=1)                      CAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTG                                                                                      <  2:604139/101‑1 (MQ=1)                      CAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTG                                                                                      >  1:2366121/1‑101 (MQ=1)                       AAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGg                                                                                     <  1:1680488/101‑2 (MQ=1)                        AGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGgc                                                                                    <  1:911702/101‑3 (MQ=1)                        AGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTG.CCCCCcccttggc                                                                                   >  1:422130/1‑93 (MQ=1)                         GCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCC                                                                                   <  1:12359/101‑1 (MQ=1)                          CCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT                                                                                  <  2:3415766/101‑1 (MQ=1)                          CCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT                                                                                  >  1:3042976/1‑101 (MQ=1)                           CGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTt                                                                                 >  2:3439190/1‑100 (MQ=11)                           CGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTt                                                                                 >  2:371517/1‑100 (MQ=11)                            GGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTtc                                                                                <  2:4112515/101‑3 (MQ=31)                            GGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTtc                                                                                <  1:3146770/101‑3 (MQ=31)                            GGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTtc                                                                                <  1:3543268/101‑3 (MQ=31)                                                                                                                                                                                                                GCTCGGCGCGCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGG....................................................................................................  <  NC_014034/1304039‑1303934 ....................................................................................................AGGGGGCGCTG.CCCCCTCTTGCCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATAT  <  NC_014034/1478641‑1478543 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG