New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1303934 =	96 (0.450)	52 (0.240)	20/190	21.5	0.26	intergenic (+121/+36)	urtE/RCAP_rcc01231	urea ABC transporter ATP‑binding protein UrtE/UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
	?	NC_014034	2578420 =	193 (0.850)					intergenic (+29/+141)	purU/pgi	formyltetrahydrofolate deformylase/glucose‑6‑phosphate isomerase
Rejected: Position hash score below cutoff.

CTCGGCGCGCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGG....................................................................................................  <  NC_014034/1304038‑1303934 ....................................................................................................GGGGGCGCTGCCCCCCTCTT.GCCTTCGGCAATTCACCCCCCGGGATATTTGCGGCAAGATGAATGAGAAGCCCCGATCGTGCTTTATCTTGCCGAAAATATCCC  >  NC_014034/2578420‑2578518                                                                                                                                                                                                                    CGCGCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGC                                                                                                     >  1:2677417/1‑101 (MQ=1)       ggctTTTATGCTTTAAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCG                                                                                                    <  2:4376378/97‑1 (MQ=0)       GCGCTTTTTGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCc                                                                                                    <  1:2888679/101‑2 (MQ=1)       GCGCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCG                                                                                                    <  1:168512/101‑1 (MQ=1)         GCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAATGGGGCGCT                                                                                                  <  2:1067930/101‑1 (MQ=1)         GCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCg                                                                                                  >  2:675838/1‑100 (MQ=1)         GCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCT                                                                                                  <  1:2925052/101‑1 (MQ=1)          tTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTG                                                                                                 <  1:1431979/100‑1 (MQ=1)          CTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTG                                                                                                 >  1:3462694/1‑101 (MQ=1)           TTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGa                                                                                                >  2:1431872/1‑100 (MQ=1)           TTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGC                                                                                                >  1:4361366/1‑101 (MQ=1)            TTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCC                                                                                               >  1:1963153/1‑101 (MQ=1)            TTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCC                                                                                               >  1:702705/1‑101 (MQ=1)              tTGCGTTCAAGCCGGTGCGCAAGCCCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCC                                                                                             <  2:3696092/100‑1 (MQ=1)              ATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCCGCCCC                                                                                             >  1:75734/1‑101 (MQ=1)               TGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCC                                                                                            >  1:582575/1‑101 (MQ=1)                GCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCC                                                                                           <  1:640906/101‑1 (MQ=1)                GCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCC                                                                                           >  1:4112775/1‑101 (MQ=1)                GCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCC                                                                                           <  1:4355531/101‑1 (MQ=1)                 gGTTAAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT                                                                                          <  2:3386869/100‑1 (MQ=1)                 CGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT                                                                                          >  1:2113536/1‑101 (MQ=1)                 CGTTAAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT                                                                                          <  1:1373840/101‑1 (MQ=1)                  GTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTC                                                                                         >  1:4440207/1‑101 (MQ=1)                  GTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTC                                                                                         >  2:3941111/1‑101 (MQ=1)                   TTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCT                                                                                        <  2:545706/101‑1 (MQ=1)                    TCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTT                                                                                       <  2:3482867/101‑1 (MQ=1)                    TCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTT                                                                                       <  2:2187415/101‑1 (MQ=1)                     CAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTT.G                                                                                     >  1:2366121/1‑101 (MQ=1)                     CAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTT.G                                                                                     <  2:604139/101‑1 (MQ=1)                      AAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTT.Gg                                                                                    <  1:1680488/101‑2 (MQ=1)                       AGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTT.Ggc                                                                                   <  1:911702/101‑3 (MQ=1)                       AGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCCCTT.Ggc                                                                                   >  1:422130/1‑99 (MQ=1)                        GCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTT.Ggcc                                                                                  <  1:12359/101‑4 (MQ=1)                         CCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTT.Ggcct                                                                                 >  1:3042976/1‑97 (MQ=1)                         CCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTT.Ggcct                                                                                 <  2:3415766/101‑5 (MQ=1)                          CGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTT.Ggcctt                                                                                >  2:3439190/1‑96 (MQ=11)                          CGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTT.Ggcctt                                                                                >  2:371517/1‑96 (MQ=11)                           GGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTC                                                                                <  2:4112515/101‑1 (MQ=31)                           GGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTC                                                                                <  1:3543268/101‑1 (MQ=31)                           GGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTC                                                                                <  1:3146770/101‑1 (MQ=31)                            GTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCG                                                                               >  1:3183332/1‑101 (MQ=32)                             ggccCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGG                                                                              <  2:1771622/97‑1 (MQ=17)                             TGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGG                                                                              <  2:702625/101‑1 (MQ=32)                             TGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGG                                                                              <  2:2527850/101‑1 (MQ=32)                              GCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGC                                                                             <  2:1815173/101‑1 (MQ=32)                               CGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGTTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCc                                                                            <  1:2749045/101‑2 (MQ=17)                                GCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCca                                                                           <  2:410126/101‑3 (MQ=32)                                GCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCca                                                                           >  2:519877/1‑99 (MQ=32)                                 CAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCcac                                                                          >  2:1964839/1‑98 (MQ=17)                                 CAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCcaa                                                                          <  1:2265005/101‑4 (MQ=32)                                 CAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCcaa                                                                          >  1:1308194/1‑98 (MQ=32)                                  AAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCcaat                                                                         >  1:1083641/1‑97 (MQ=14)                                                                                                                                                                                                               CTCGGCGCGCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGG....................................................................................................  <  NC_014034/1304038‑1303934 ....................................................................................................GGGGGCGCTGCCCCCCTCTT.GCCTTCGGCAATTCACCCCCCGGGATATTTGCGGCAAGATGAATGAGAAGCCCCGATCGTGCTTTATCTTGCCGAAAATATCCC  >  NC_014034/2578420‑2578518 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG